Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 0.0e+00 2016.5 1238 100.0
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 7.4e-258 894.8 1274 58.2
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 1.9e-245 853.6 1265 56.8
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.3e-233 814.3 1274 56.3
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 1.0e-227 794.7 1259 55.4
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 4.1e-224 782.7 1340 51.3
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 5.0e-222 775.8 1283 52.4
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 8.6e-222 775.0 1269 54.4
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.4e-218 763.1 1269 53.9
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 9.8e-218 761.5 1277 52.4
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 2.9e-217 760.0 1267 50.7
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.4e-217 758.8 1269 53.8
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 7.3e-213 745.3 1265 52.6
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.2e-208 729.9 1265 52.1
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 6.6e-206 722.2 1259 44.7
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-202 711.1 1266 52.1
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 9.9e-202 708.4 1272 51.6
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.2e-200 703.4 1267 51.9
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 4.6e-199 699.5 1262 50.6
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 4.6e-199 699.5 1282 50.6
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 2.3e-198 697.2 1272 50.5
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 2.0e-194 684.1 1292 50.8
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 3.4e-194 683.3 1282 50.9
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 8.7e-190 668.7 1258 47.0
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 7.3e-189 665.6 1258 50.5
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.8e-188 663.7 1288 47.6
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 4.0e-187 659.8 1291 43.7
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 6.9e-187 659.1 1260 48.4
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 2.0e-186 657.5 1096 44.5
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 1.4e-184 651.4 1254 45.6
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.4e-184 651.4 1253 50.4
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 5.6e-181 639.4 1039 51.9
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 5.6e-181 639.4 1253 45.7
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 2.1e-180 637.5 1255 47.2
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.4e-179 634.8 1285 45.8
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.7e-177 627.9 1264 47.5
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.8e-172 610.5 1273 47.0
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.7e-172 610.1 1272 43.2
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.0e-169 602.1 1257 47.5
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 1.3e-169 601.7 1257 46.3
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 1.6e-167 594.7 1261 44.8
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.3e-166 591.7 1169 47.6
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 3.9e-166 590.1 1256 40.6
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 3.9e-166 590.1 1044 46.2
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 2.8e-164 583.9 835 47.1
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 1.8e-163 581.3 1250 43.9
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 2.0e-162 577.8 1328 44.7
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 3.4e-162 577.0 1269 42.9
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 5.0e-161 573.2 1268 43.7
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 2.8e-156 557.4 1257 41.8
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 2.5e-152 544.3 1259 43.0
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 4.6e-151 540.0 1270 42.6
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 4.8e-148 530.0 1291 40.0
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 8.2e-148 529.3 1254 41.6
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 1.1e-147 528.9 1316 39.7
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.1e-147 528.9 1338 38.0
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 5.3e-147 526.6 1271 41.2
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 6.9e-147 526.2 1302 40.1
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 5.9e-138 496.5 1074 42.6
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 5.9e-138 496.5 1279 38.1
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.1e-136 492.3 1280 38.8
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 7.2e-136 489.6 1271 39.9
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 4.4e-133 480.3 1272 40.6
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 9.7e-133 479.2 1209 37.0
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 3.4e-125 454.1 1268 40.4
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 6.3e-124 449.9 1176 38.0
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 1.9e-120 438.3 1294 44.3
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 2.5e-120 438.0 1296 39.4
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.0e-118 432.6 1094 40.0
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 5.4e-115 420.2 633 44.2
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 5.9e-114 416.8 846 37.2
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.5e-112 411.4 1224 40.0
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 4.3e-112 410.6 1374 41.1
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 8.0e-111 406.4 1275 36.1
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 1.8e-110 405.2 1105 45.3
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 6.8e-110 403.3 855 38.4
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.6e-109 401.4 1270 34.3
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 5.4e-107 393.7 1291 40.1
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 1.2e-106 392.5 1300 38.7
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 7.8e-106 389.8 1284 39.1
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.2e-103 382.5 1270 39.4
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 5.2e-102 377.1 1340 33.5
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 7.5e-101 373.2 1027 38.4
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.4e-99 369.0 820 37.4
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 3.0e-97 361.3 764 36.9
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 6.8e-94 350.1 1346 36.7
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 1.5e-93 349.0 1130 41.7
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 1.7e-92 345.5 1073 32.6
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 3.7e-92 344.4 1320 39.4
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 8.3e-92 343.2 1342 37.0
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 9.2e-91 339.7 837 36.3
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 5.1e-89 334.0 1073 32.2
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 5.6e-88 330.5 1276 36.8
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 9.5e-88 329.7 807 35.4
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 4.0e-86 324.3 1028 41.9
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 3.4e-85 321.2 839 34.6
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 5.8e-85 320.5 849 35.2
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 5.8e-85 320.5 849 35.6
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 1.7e-84 318.9 870 34.4
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.2e-84 318.5 728 35.7
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 6.4e-84 317.0 847 35.2
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 6.4e-84 317.0 721 36.6
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 8.4e-84 316.6 1321 38.8
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 1.1e-83 316.2 849 35.3
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 1.1e-83 316.2 848 35.1
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 4.1e-83 314.3 848 35.1
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 5.4e-83 313.9 1387 37.4
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 5.4e-83 313.9 612 39.1
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 2.7e-82 311.6 613 39.0
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.7e-82 311.6 842 34.1
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 7.8e-82 310.1 716 35.6
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 5.1e-81 307.4 1368 33.8
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.5e-80 305.1 679 36.5
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.2e-79 302.8 681 36.1
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 6.9e-78 297.0 1110 36.4
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.2e-77 296.2 848 32.0
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.5e-77 295.8 1062 33.7
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-75 289.7 600 35.5
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 3.5e-74 284.6 928 31.2
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 9.9e-69 266.5 457 41.4
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 3.8e-68 264.6 677 37.8
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.1e-66 258.8 1380 35.7
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 4.6e-66 257.7 863 31.9
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 8.7e-65 253.4 1124 41.4
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.1e-64 253.1 1409 33.4
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 1.6e-63 249.2 1389 34.1
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 1.8e-62 245.7 1332 31.5
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 5.3e-62 244.2 1326 27.8
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 9.0e-62 243.4 690 33.5
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.5e-61 242.7 1411 36.4
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 1.9e-59 235.7 782 32.4
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 4.6e-58 231.1 1380 36.4
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 4.6e-58 231.1 1380 36.4
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 2.2e-52 212.2 653 31.5
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 2.3e-49 202.2 717 29.4
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 2.5e-48 198.7 1212 33.4
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 1.5e-40 172.9 686 30.3
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 1.3e-39 169.9 1282 30.0
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 1.3e-39 169.9 881 28.3
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 2.8e-39 168.7 676 30.0
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 1.8e-38 166.0 949 37.2
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 2.1e-34 152.5 1159 30.9
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 4.6e-34 151.4 843 26.7
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.0e-32 146.0 547 30.0
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.2e-31 142.5 701 27.2
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 3.7e-31 141.7 703 25.9
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.7e-31 141.7 1342 35.4
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 5.5e-27 127.9 540 26.9
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 3.6e-26 125.2 546 29.7
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 4.4e-24 118.2 806 26.8
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 5.7e-24 117.9 669 26.8
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 9.7e-24 117.1 661 26.3
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.2e-21 110.2 543 32.6
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 9.4e-19 100.5 170 47.1
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 2.7e-18 99.0 693 28.0
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 4.7e-18 98.2 394 29.2
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 5.2e-17 94.7 1182 36.4
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 1.4e-14 86.7 933 34.7
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 1.3e-12 80.1 141 45.4
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 7.2e-11 74.3 665 26.5
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.6e-10 73.2 308 32.8
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 2.6e-08 65.9 164 34.1
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 2.6e-08 65.9 164 34.1
BcaC08g45378 Brassica carinata HOM05D003962 ORTHO05D032564 9.8e-08 63.9 106 41.5
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 4.8e-07 61.6 96 36.5
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 4.8e-07 61.6 96 36.5
SHI02386 Sapria himalayana HOM05D003962 ORTHO05D004714 5.4e-06 58.2 100 43.0


User provided reference genes

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