Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 0.0e+00 1409.4 789 100.0
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 5.4e-129 466.1 818 44.0
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 3.9e-127 459.9 811 45.3
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 1.8e-124 451.1 820 42.4
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 3.4e-123 446.8 816 43.4
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 3.8e-122 443.4 787 42.7
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 6.4e-122 442.6 788 43.0
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 8.4e-122 442.2 790 42.7
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 8.4e-122 442.2 791 43.5
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.4e-121 439.5 790 42.4
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.2e-120 438.3 790 42.3
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.5e-118 430.6 790 42.5
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 1.8e-116 424.5 819 42.4
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 4.2e-113 413.3 846 41.6
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 1.2e-112 411.8 802 42.0
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 4.6e-112 409.8 820 40.7
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 7.9e-112 409.1 820 41.7
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 1.0e-111 408.7 797 40.8
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.1e-110 405.2 805 41.7
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 1.4e-108 398.3 806 40.7
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 3.4e-107 393.7 810 39.6
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 2.9e-106 390.6 795 42.6
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 1.3e-103 381.7 840 40.1
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.3e-103 381.7 799 39.4
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 1.8e-103 381.3 795 43.0
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 3.9e-103 380.2 828 40.5
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 1.5e-102 378.3 833 39.1
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 6.3e-101 372.9 826 39.3
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 3.1e-100 370.5 694 41.6
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 1.3e-98 365.2 795 40.1
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 6.5e-98 362.8 667 42.0
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 1.4e-89 335.1 792 38.4
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 9.4e-89 332.4 818 37.7
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 1.6e-88 331.6 838 38.7
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.8e-87 328.2 834 38.2
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.3e-87 327.8 825 38.8
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 3.0e-87 327.4 801 37.2
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 4.8e-85 320.1 823 38.5
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.8e-84 318.2 853 35.3
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.0e-82 312.4 835 36.6
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 2.2e-82 311.2 823 40.1
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 1.5e-81 308.5 830 38.4
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 1.9e-81 308.1 837 37.4
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 5.2e-79 300.1 835 35.2
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 5.2e-79 300.1 784 38.0
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 8.8e-79 299.3 761 37.2
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 1.3e-77 295.4 810 35.9
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 6.3e-77 293.1 816 37.7
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 4.1e-76 290.4 815 37.7
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 9.1e-76 289.3 808 35.0
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 1.2e-75 288.9 812 37.8
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.0e-74 285.8 818 35.3
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 1.9e-73 281.6 690 36.8
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 7.2e-73 279.6 828 35.0
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 7.2e-73 279.6 816 33.8
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 8.0e-72 276.2 798 36.0
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.8e-71 275.0 793 34.3
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 5.2e-71 273.5 551 42.6
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 6.8e-71 273.1 811 36.3
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 1.2e-70 272.3 819 36.1
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 1.5e-70 271.9 811 33.9
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.6e-70 271.2 793 34.6
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 9.7e-70 269.2 796 34.8
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 2.2e-69 268.1 811 34.6
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 4.8e-69 266.9 793 33.8
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 1.4e-68 265.4 845 32.9
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 1.4e-68 265.4 772 33.7
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 2.4e-68 264.6 789 36.5
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 3.5e-67 260.8 804 34.2
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 7.7e-67 259.6 804 36.3
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 1.7e-66 258.5 780 33.5
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 3.8e-66 257.3 783 33.3
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 6.5e-66 256.5 781 34.3
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 6.5e-66 256.5 819 34.3
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 2.5e-65 254.6 774 32.8
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 5.5e-65 253.4 783 34.1
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 5.5e-65 253.4 775 32.6
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 7.2e-65 253.1 813 34.9
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 2.1e-64 251.5 796 33.0
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 2.1e-64 251.5 819 32.4
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 3.6e-64 250.8 788 33.4
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 4.7e-64 250.4 791 33.0
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 8.0e-64 249.6 807 33.5
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 8.8e-63 246.1 823 34.8
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.5e-62 245.4 791 32.4
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 4.8e-61 240.4 815 33.4
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 5.4e-60 236.9 780 32.6
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 7.0e-60 236.5 772 31.2
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 7.7e-59 233.0 797 32.9
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.1e-57 229.2 782 32.9
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 2.1e-56 224.9 803 32.6
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 2.8e-56 224.6 684 33.8
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 4.7e-56 223.8 796 32.9
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 6.1e-56 223.4 657 32.9
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 1.0e-55 222.6 828 32.4
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 4.0e-55 220.7 824 32.4
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 6.8e-55 219.9 771 32.7
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 1.2e-54 219.2 778 31.1
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.3e-53 215.7 695 33.8
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 4.9e-53 213.8 543 39.8
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 3.3e-49 201.1 809 30.2
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.2e-48 199.1 790 30.9
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 2.1e-48 198.4 792 32.1
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 3.6e-48 197.6 779 29.0
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 6.1e-48 196.8 783 29.9
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 2.3e-47 194.9 765 32.7
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 2.9e-45 188.0 786 29.9
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 3.2e-44 184.5 785 30.1
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 9.2e-44 183.0 736 31.5
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 2.0e-43 181.8 333 45.6
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 3.5e-43 181.0 788 31.5
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 1.9e-41 175.3 723 31.3
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.4e-39 169.1 808 28.8
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 1.7e-37 162.2 751 28.1
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 2.9e-37 161.4 723 28.6
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 5.4e-36 157.1 756 31.9
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.1e-33 149.4 797 28.0
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 3.6e-32 144.4 767 28.7
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 8.1e-32 143.3 761 27.9
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 4.0e-31 141.0 793 28.4
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 9.9e-30 136.3 818 27.5
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 2.9e-29 134.8 768 27.9
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 8.3e-29 133.3 796 25.6
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 1.9e-28 132.1 181 47.0
arahy.Tifrunner.gnm1.ann1.3X1084 Arachis hypogaea HOM05D003765 ORTHO05D004561 4.6e-27 127.5 868 27.3
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 3.0e-26 124.8 209 45.9
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.9e-25 122.1 796 26.8
ATR0661G439 Amborella trichopoda HOM05D003765 ORTHO05D004561 3.6e-24 117.9 853 26.3
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 6.2e-24 117.1 773 25.6
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 4.0e-23 114.4 321 34.3
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 5.2e-23 114.0 310 33.2
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 9.9e-22 109.8 775 26.2
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 1.1e-20 106.3 301 35.9
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 2.4e-20 105.1 251 38.6
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 3.2e-20 104.8 251 39.4
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 7.1e-20 103.6 314 32.8
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 1.6e-19 102.4 324 36.1
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 2.7e-19 101.7 237 38.4
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 4.6e-19 100.9 317 32.8
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 7.8e-19 100.1 237 38.4
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 7.8e-19 100.1 344 32.6
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 3.9e-18 97.8 239 36.4
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 5.1e-18 97.4 329 32.2
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 5.1e-18 97.4 329 32.2
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 6.6e-18 97.1 323 32.5
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 1.1e-17 96.3 323 32.5
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 2.5e-17 95.1 236 36.4
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 3.3e-17 94.7 757 25.8
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 9.6e-17 93.2 236 36.0
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 1.6e-16 92.4 371 31.3
Lalb_Chr19g0131131 Lupinus albus HOM05D003765 ORTHO05D004561 1.6e-16 92.4 240 35.8
arahy.Tifrunner.gnm1.ann1.XAW92V Arachis hypogaea HOM05D003765 ORTHO05D004561 1.1e-15 89.7 862 26.0
unitig_22.g5225 Utricularia gibba HOM05D003765 ORTHO05D004561 1.5e-14 85.9 246 29.7
VMungo0100G0003 Vigna mungo HOM05D003765 ORTHO05D004561 1.5e-14 85.9 112 52.7
SEGI_17592 Sequoiadendron giganteum HOM05D003765 ORTHO05D004561 2.0e-14 85.5 187 27.8
VMungo0251G2630 Vigna mungo HOM05D003765 ORTHO05D004561 2.0e-14 85.5 112 51.8
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 3.8e-13 81.3 534 26.4
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 4.9e-13 80.9 369 30.9
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 2.4e-12 78.6 335 28.4
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 4.2e-12 77.8 363 30.3
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 9.3e-12 76.6 209 35.4
Lalb_Chr19g0131141 Lupinus albus HOM05D003765 ORTHO05D004561 1.2e-11 76.3 159 32.7
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 1.6e-11 75.9 705 24.8
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 3.5e-11 74.7 365 29.6
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 4.6e-11 74.3 250 32.0
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 2.3e-10 72.0 309 30.1
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 2.5e-09 68.6 265 31.7
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 4.3e-09 67.8 365 29.9
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 7.3e-09 67.0 184 28.3
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 1.6e-08 65.9 363 29.5
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 1.6e-08 65.9 363 29.5
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 2.1e-08 65.5 226 33.2
Prupe.2G227000 Prunus persica HOM05D002036 ORTHO05D001913 8.1e-08 63.5 111 35.1
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 1.4e-07 62.8 176 23.9
Os04g0106500 Oryza sativa ssp. japonica HOM05D003765 ORTHO05D004561 2.6e-06 58.5 240 28.8
Mapoly0151s0019 Marchantia polymorpha HOM05D002515 ORTHO05D002722 3.4e-06 58.2 201 25.4
Mapoly0001s0174 Marchantia polymorpha HOM05D002515 ORTHO05D002722 7.6e-06 57.0 186 27.4


User provided reference genes

Program Settings