Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 9.3e-162 573.5 302 100.0
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 2.9e-131 472.2 302 83.8
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 3.8e-131 471.9 302 82.8
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 3.8e-131 471.9 302 82.8
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 1.1e-130 470.3 303 81.2
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 7.1e-130 467.6 302 82.5
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 7.1e-130 467.6 302 82.1
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 1.2e-129 466.8 302 82.1
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.2e-129 466.8 302 82.1
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 6.1e-129 464.5 302 81.8
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 7.4e-127 457.6 302 80.5
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 6.3e-126 454.5 331 74.3
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 6.3e-126 454.5 331 74.3
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 6.9e-125 451.1 302 76.5
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 3.4e-124 448.7 302 77.5
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 5.9e-124 448.0 303 76.9
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 5.0e-123 444.9 302 77.5
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 5.0e-123 444.9 302 76.5
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 1.6e-121 439.9 306 76.5
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 2.7e-121 439.1 305 76.1
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 4.6e-121 438.3 302 76.8
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 4.6e-121 438.3 308 75.0
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 7.9e-121 437.6 302 77.2
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 7.9e-121 437.6 305 75.4
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 2.3e-120 436.0 302 76.8
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 3.0e-120 435.6 314 74.5
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 8.8e-120 434.1 304 76.0
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 2.0e-119 433.0 302 75.8
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 2.5e-119 432.6 302 75.8
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 3.3e-119 432.2 302 74.5
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 7.4e-119 431.0 302 76.2
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 1.7e-118 429.9 303 74.6
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 1.7e-118 429.9 312 73.4
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 2.2e-118 429.5 312 75.0
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 2.2e-118 429.5 312 74.4
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 4.8e-118 428.3 321 74.8
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 6.3e-118 427.9 312 73.7
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 8.2e-118 427.6 303 75.6
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 6.9e-117 424.5 306 74.5
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 9.1e-117 424.1 306 72.2
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 9.1e-117 424.1 303 75.6
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 1.2e-116 423.7 312 73.1
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 1.2e-116 423.7 307 73.6
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 1.2e-116 423.7 304 73.7
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 1.5e-116 423.3 309 72.5
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 2.0e-116 422.9 306 71.9
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 2.0e-116 422.9 302 73.8
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 2.6e-116 422.5 306 72.2
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 3.4e-116 422.2 306 71.6
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 3.4e-116 422.2 306 71.9
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 3.4e-116 422.2 279 78.1
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 3.4e-116 422.2 302 74.2
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 3.4e-116 422.2 303 74.6
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 4.5e-116 421.8 306 71.6
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 7.7e-116 421.0 306 71.9
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 1.7e-115 419.9 306 72.9
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 2.2e-115 419.5 302 73.5
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 2.2e-115 419.5 302 74.2
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 2.9e-115 419.1 302 71.9
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 2.9e-115 419.1 306 71.6
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 3.8e-115 418.7 303 74.6
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 5.0e-115 418.3 306 71.6
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 5.0e-115 418.3 303 72.3
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 6.5e-115 417.9 306 70.9
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 8.5e-115 417.5 306 74.5
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 1.1e-114 417.2 306 70.6
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 3.2e-114 415.6 307 71.3
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 3.2e-114 415.6 307 72.3
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 5.5e-114 414.8 304 73.4
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 5.5e-114 414.8 304 73.4
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 5.5e-114 414.8 304 74.3
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 1.2e-113 413.7 310 73.2
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 2.1e-113 412.9 271 77.5
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 6.1e-113 411.4 308 74.7
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 7.9e-113 411.0 300 70.0
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 2.3e-112 409.5 302 70.2
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 6.7e-112 407.9 335 66.0
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 1.1e-111 407.1 306 70.3
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 1.1e-111 407.1 348 65.2
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 4.4e-111 405.2 270 76.3
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 2.2e-110 402.9 271 75.3
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 3.7e-110 402.1 307 72.6
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 4.8e-110 401.7 299 70.2
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 9.1e-109 397.5 311 68.5
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 2.0e-108 396.4 300 69.7
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 7.7e-108 394.4 275 75.6
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 1.2e-105 387.1 324 67.3
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 2.3e-104 382.9 302 66.6
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 8.8e-104 380.9 306 67.3
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 2.9e-99 365.9 301 64.1
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 3.2e-98 362.5 320 63.4
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 4.2e-98 362.1 302 65.6
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 2.1e-97 359.8 321 63.6
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 3.4e-95 352.4 316 61.1
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 2.8e-94 349.4 343 59.2
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 1.7e-86 323.6 272 63.6
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 2.7e-84 316.2 233 72.1
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 4.5e-84 315.5 297 58.9
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 7.7e-84 314.7 227 74.0
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 1.7e-83 313.5 202 83.2
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 1.5e-82 310.5 256 67.6
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 1.4e-80 303.9 237 69.6
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 5.2e-80 302.0 313 56.2
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 3.3e-74 282.7 302 52.6
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 2.3e-67 260.0 209 67.5
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 2.9e-62 243.0 262 48.9
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 1.6e-57 227.3 192 67.2
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 1.1e-53 214.5 262 44.3
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 1.1e-48 198.0 312 38.8
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 1.5e-47 194.1 297 38.0
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 2.6e-47 193.4 155 70.3
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 6.2e-41 172.2 313 35.8
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 5.3e-40 169.1 239 41.4
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 5.4e-37 159.1 182 53.3
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 1.5e-34 151.0 116 68.1
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 6.7e-27 125.6 205 38.5
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 8.7e-27 125.2 88 75.0
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 4.6e-20 102.8 74 70.3
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 1.1e-16 91.7 93 53.8
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 6.9e-16 89.0 135 45.9
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 2.0e-15 87.4 81 56.8
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 9.7e-10 68.6 79 55.7
SEGI_35321 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 7.7e-07 58.9 60 43.3


User provided reference genes

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