Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 5.0e-48 194.1 99 100.0
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 4.0e-37 157.9 99 83.8
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 6.8e-37 157.1 91 86.8
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 8.8e-37 156.8 94 79.8
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 2.6e-36 155.2 99 81.8
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 2.6e-36 155.2 94 84.0
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 2.6e-36 155.2 94 84.0
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 2.6e-36 155.2 97 81.4
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 3.4e-36 154.8 94 80.9
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 3.4e-36 154.8 97 81.4
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 4.4e-36 154.5 99 77.8
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 5.7e-36 154.1 94 79.8
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 5.7e-36 154.1 97 81.4
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 5.7e-36 154.1 86 86.0
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 7.5e-36 153.7 99 79.8
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 7.5e-36 153.7 92 81.5
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 1.3e-35 152.9 99 78.8
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 2.2e-35 152.1 90 83.3
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 6.3e-35 150.6 93 79.6
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 6.3e-35 150.6 93 79.6
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 6.3e-35 150.6 93 79.6
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 6.3e-35 150.6 93 79.6
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 6.3e-35 150.6 91 85.7
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 6.3e-35 150.6 97 79.4
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 8.3e-35 150.2 93 79.6
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 1.4e-34 149.4 92 81.5
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 2.4e-34 148.7 99 78.8
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 2.4e-34 148.7 93 78.5
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 2.4e-34 148.7 99 78.8
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 3.1e-34 148.3 86 86.0
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 3.1e-34 148.3 82 86.6
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 3.1e-34 148.3 92 80.4
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 4.1e-34 147.9 99 77.8
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 4.1e-34 147.9 81 87.7
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 4.1e-34 147.9 89 84.3
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 5.4e-34 147.5 94 78.7
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 7.0e-34 147.1 84 84.5
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 9.2e-34 146.7 91 80.2
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 1.2e-33 146.4 97 78.4
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 1.2e-33 146.4 89 84.3
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 1.2e-33 146.4 86 83.7
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 1.6e-33 146.0 86 81.4
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 1.6e-33 146.0 92 79.3
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 1.6e-33 146.0 89 84.3
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 1.6e-33 146.0 89 84.3
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 1.6e-33 146.0 89 84.3
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 2.0e-33 145.6 87 81.6
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 2.7e-33 145.2 92 77.2
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 3.5e-33 144.8 84 84.5
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 4.5e-33 144.4 82 82.9
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 4.5e-33 144.4 91 76.9
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 5.9e-33 144.1 89 80.9
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 5.9e-33 144.1 91 80.2
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 5.9e-33 144.1 81 84.0
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 7.8e-33 143.7 82 82.9
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 1.0e-32 143.3 86 80.2
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 1.0e-32 143.3 82 82.9
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 1.3e-32 142.9 82 85.4
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 1.7e-32 142.5 82 85.4
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 1.7e-32 142.5 82 82.9
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 1.7e-32 142.5 89 78.7
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 1.7e-32 142.5 89 78.7
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 1.7e-32 142.5 93 78.5
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 2.3e-32 142.1 91 81.3
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 2.3e-32 142.1 82 82.9
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 2.3e-32 142.1 123 65.9
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 2.9e-32 141.7 86 80.2
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 3.8e-32 141.4 92 76.1
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 6.6e-32 140.6 99 72.7
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 6.6e-32 140.6 88 80.7
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 8.6e-32 140.2 99 72.7
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 1.1e-31 139.8 82 81.7
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 1.1e-31 139.8 81 82.7
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 1.5e-31 139.4 80 85.0
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 1.9e-31 139.0 93 75.3
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 1.9e-31 139.0 81 82.7
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 2.5e-31 138.7 82 81.7
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 3.3e-31 138.3 99 71.7
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 3.3e-31 138.3 92 76.1
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 3.3e-31 138.3 94 74.5
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 5.6e-31 137.5 79 84.8
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 9.5e-31 136.7 79 82.3
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 1.6e-30 136.0 92 70.7
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 1.6e-30 136.0 92 70.7
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 1.6e-30 136.0 92 70.7
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 1.6e-30 136.0 94 68.1
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 2.1e-30 135.6 94 74.5
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 2.1e-30 135.6 82 80.5
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 4.7e-30 134.4 92 71.7
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 8.0e-30 133.7 93 73.1
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 8.0e-30 133.7 80 78.8
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 8.0e-30 133.7 82 80.5
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 1.0e-29 133.3 100 69.0
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 1.8e-29 132.5 82 76.8
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 1.8e-29 132.5 82 76.8
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 1.8e-29 132.5 91 73.6
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 1.8e-29 132.5 93 72.0
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 4.0e-29 131.3 80 77.5
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 4.0e-29 131.3 82 74.4
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 4.0e-29 131.3 73 86.3
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 4.0e-29 131.3 82 76.8
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 5.2e-29 131.0 90 72.2
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 8.9e-29 130.2 90 70.0
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 8.9e-29 130.2 80 80.0
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 1.2e-28 129.8 92 70.7
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 1.2e-28 129.8 95 71.6
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 2.0e-28 129.0 92 68.5
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 2.0e-28 129.0 92 68.5
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 5.7e-28 127.5 78 78.2
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 2.4e-26 122.1 68 88.2
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 2.7e-25 118.6 152 49.3
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 5.9e-25 117.5 78 71.8
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 1.5e-23 112.8 132 50.0
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 5.6e-23 110.9 95 56.8
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 7.3e-23 110.5 62 87.1
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 1.2e-22 109.8 78 66.7
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 4.0e-21 104.8 72 75.0
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 7.8e-17 90.5 56 78.6
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 7.8e-17 90.5 56 78.6
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 7.8e-17 90.5 56 78.6
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 5.6e-15 84.3 94 48.9
Actinidia00310 Actinidia chinensis HOM05D006528 ORTHO05D008117 1.1e-13 80.1 59 71.2
Gorai.013G055100 Gossypium raimondii HOM05D006528 ORTHO05D008117 3.0e-08 62.0 48 68.8


User provided reference genes

Program Settings