Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 1.0e-257 892.9 444 100.0
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 6.2e-207 724.2 399 87.5
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 5.1e-76 289.3 416 39.2
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 2.5e-75 287.0 400 40.5
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 5.7e-75 285.8 393 41.2
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.6e-74 284.3 427 39.6
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 2.8e-74 283.5 397 39.0
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 3.7e-74 283.1 399 40.9
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.8e-74 282.7 395 41.8
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 3.1e-73 280.0 402 41.3
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.3e-73 279.3 394 41.1
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 1.5e-72 277.7 410 39.3
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 3.4e-72 276.6 417 38.1
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 5.9e-72 275.8 404 40.1
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 1.4e-70 271.2 397 39.3
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 3.2e-70 270.0 396 39.1
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.2e-70 269.6 396 39.4
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.7e-69 266.9 406 38.4
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 1.0e-68 265.0 396 39.1
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.0e-68 265.0 396 39.1
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 2.3e-68 263.8 408 38.7
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 2.3e-68 263.8 405 41.0
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 6.7e-68 262.3 404 38.4
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 8.8e-68 261.9 398 38.7
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 2.0e-67 260.8 403 36.5
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 5.7e-67 259.2 407 36.4
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 8.2e-66 255.4 409 37.2
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 1.1e-65 255.0 413 36.1
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 1.8e-65 254.2 402 38.1
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 1.8e-65 254.2 347 36.9
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 4.1e-65 253.1 411 37.5
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 9.1e-65 251.9 397 38.0
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 1.2e-64 251.5 395 36.5
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 1.5e-64 251.1 394 36.8
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 1.5e-64 251.1 396 37.1
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 1.5e-64 251.1 396 37.1
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 3.8e-63 246.5 395 37.5
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 8.5e-63 245.4 406 36.2
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 1.4e-62 244.6 403 36.5
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 1.9e-62 244.2 396 36.1
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 1.9e-62 244.2 402 36.6
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 4.2e-62 243.0 409 36.7
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 4.2e-62 243.0 434 34.1
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.1e-61 240.7 412 37.1
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 4.7e-61 239.6 393 37.9
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 1.8e-60 237.7 343 39.1
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 3.0e-60 236.9 418 36.1
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 2.0e-59 234.2 397 37.5
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 5.7e-59 232.6 553 29.3
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 7.4e-59 232.3 407 33.2
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 2.2e-58 230.7 415 36.1
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 4.8e-58 229.6 425 33.4
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.1e-57 226.9 423 35.7
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 3.5e-56 223.4 386 35.0
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 3.5e-56 223.4 425 33.9
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 3.5e-56 223.4 390 34.4
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.8e-55 219.9 362 34.8
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 5.0e-55 219.5 332 38.0
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 6.5e-55 219.2 397 36.5
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 1.1e-54 218.4 398 33.9
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 1.5e-54 218.0 395 34.7
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.9e-54 217.6 454 32.4
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 4.2e-54 216.5 377 34.2
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 7.2e-54 215.7 431 33.9
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 1.2e-53 214.9 412 32.8
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 1.6e-53 214.5 400 33.5
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 3.6e-53 213.4 398 36.2
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 4.7e-53 213.0 429 32.9
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 6.1e-53 212.6 428 32.2
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 6.1e-53 212.6 402 33.3
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 1.8e-52 211.1 418 33.5
AUR62035876 Chenopodium quinoa HOM05D003575 ORTHO05D003587 2.3e-52 210.7 428 32.5
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 3.0e-52 210.3 401 32.2
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 5.2e-52 209.5 418 33.0
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 5.2e-52 209.5 438 32.4
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 6.7e-52 209.1 394 34.3
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 1.5e-51 208.0 401 32.4
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 1.5e-51 208.0 418 32.3
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 2.0e-51 207.6 408 31.9
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 3.3e-51 206.8 418 31.8
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 1.7e-50 204.5 409 32.8
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 2.2e-50 204.1 345 35.9
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 2.2e-50 204.1 424 33.7
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 2.8e-50 203.8 437 33.0
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 8.2e-50 202.2 394 32.7
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 1.4e-49 201.4 338 35.2
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.0e-48 197.6 345 36.2
EL10Ac9g22664 Beta vulgaris HOM05D003575 ORTHO05D003587 4.5e-48 196.4 458 29.0
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 5.9e-48 196.1 401 32.7
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 2.2e-47 194.1 408 31.9
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 3.8e-47 193.4 371 31.5
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.5e-46 190.7 330 36.7
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 2.1e-45 187.6 395 31.4
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.1e-45 186.0 405 32.3
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 1.4e-44 184.9 392 32.1
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 4.0e-44 183.3 400 32.2
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.2e-43 181.8 322 31.4
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 4.4e-43 179.9 393 32.6
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 9.8e-43 178.7 400 32.2
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 2.8e-42 177.2 396 32.1
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 8.3e-42 175.6 412 31.3
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 7.0e-41 172.6 331 31.4
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 4.5e-40 169.9 344 32.0
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 1.5e-38 164.9 166 48.8
FAN16G0569 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.5e-38 164.1 346 33.2
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 1.2e-37 161.8 179 45.3
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 4.0e-36 156.8 328 31.4
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 3.4e-35 153.7 402 29.9
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 4.4e-35 153.3 167 41.9
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 1.3e-34 151.8 292 33.6
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 9.1e-33 145.6 168 41.1
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 1.3e-31 141.7 404 29.5
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 5.0e-31 139.8 237 36.7
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 2.5e-30 137.5 165 42.4
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 3.3e-30 137.1 148 46.6
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 7.2e-30 136.0 213 37.1
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 1.2e-29 135.2 159 45.3
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.6e-29 134.8 172 44.2
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 1.5e-27 128.3 166 39.8
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 1.1e-25 122.1 179 38.5
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.2e-25 120.6 175 38.9
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 3.2e-25 120.6 166 34.9
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 9.2e-25 119.0 160 36.9
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.2e-24 118.6 189 34.9
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.0e-24 117.9 166 39.8
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 4.6e-24 116.7 189 34.4
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 5.9e-24 116.3 166 39.2
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 5.9e-24 116.3 369 26.3
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 7.8e-24 115.9 169 36.7
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 1.7e-23 114.8 169 34.9
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 1.7e-23 114.8 169 34.9
Dinv26593 Davidia involucrata HOM05D003575 ORTHO05D003587 2.3e-23 114.4 199 36.2
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 8.6e-23 112.5 175 35.4
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 1.5e-22 111.7 148 36.5
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 1.9e-22 111.3 170 33.5
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 4.3e-22 110.2 163 31.9
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 5.6e-22 109.8 166 33.7
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 5.6e-22 109.8 166 33.7
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 5.6e-22 109.8 148 36.5
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 9.5e-22 109.0 126 43.7
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 9.5e-22 109.0 175 34.9
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-21 108.6 169 33.1
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 6.2e-21 106.3 165 33.9
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 6.2e-21 106.3 165 34.5
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 6.2e-21 106.3 148 39.9
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 1.0e-20 105.5 165 33.9
MBI15_g06462_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 1.4e-20 105.1 299 29.1
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.4e-20 105.1 133 44.4
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 1.8e-20 104.8 165 33.9
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 6.8e-20 102.8 169 34.9
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 1.2e-19 102.1 150 37.3
Cc00_g01040 Coffea canephora HOM05D003575 ORTHO05D003587 1.5e-19 101.7 164 39.0
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.6e-19 100.9 155 36.1
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 2.6e-19 100.9 179 34.6
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.4e-19 100.5 120 40.8
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 5.8e-19 99.8 165 32.1
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 1.3e-18 98.6 101 47.5
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 1.7e-18 98.2 100 47.0
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 6.4e-18 96.3 166 31.9
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 3.2e-17 94.0 110 41.8
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 2.0e-16 91.3 164 32.3
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 5.0e-15 86.7 103 39.8
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 2.5e-14 84.3 107 43.0
PSO017G1253 Papaver somniferum HOM05D003575 ORTHO05D003587 9.5e-14 82.4 145 31.0
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 1.2e-13 82.0 135 33.3
PSO017G4852 Papaver somniferum HOM05D003575 ORTHO05D003587 2.8e-13 80.9 167 31.7
Oeu041110.1 Olea europaea HOM05D003575 ORTHO05D003587 4.7e-13 80.1 77 50.6
Os05g0386400 Oryza sativa ssp. japonica HOM05D003575 ORTHO05D003587 8.1e-13 79.3 192 31.2
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 1.1e-12 79.0 104 34.6
Lsat_1_v5_gn_8_78381 Lactuca sativa HOM05D003575 ORTHO05D003587 1.8e-12 78.2 124 36.3
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 8.9e-12 75.9 100 42.0
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-11 75.5 101 39.6
PSO339G5808 Papaver somniferum HOM05D003575 ORTHO05D003587 1.2e-11 75.5 128 38.3
MD09G1128900 Malus domestica HOM05D003575 ORTHO05D003587 5.8e-11 73.2 113 36.3
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 4.9e-10 70.1 63 54.0
Mapoly0033s0032 Marchantia polymorpha HOM05D003575 ORTHO05D003587 6.4e-10 69.7 166 28.9
Zm00001eb264990 Zea mays HOM05D003575 ORTHO05D003587 1.1e-09 68.9 137 27.7
Mapoly0021s0099 Marchantia polymorpha HOM05D003575 ORTHO05D003587 1.9e-09 68.2 151 29.1
Mapoly0066s0003 Marchantia polymorpha HOM05D040683 ORTHO05D003587 2.7e-08 64.3 141 30.5
Aqoxy91s001 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 7.8e-08 62.8 114 35.1
RcHm_v2.0_Chr2g0155531 Rosa chinensis HOM05D003575 ORTHO05D003587 8.6e-07 59.3 57 42.1
Mapoly0072s0063 Marchantia polymorpha HOM05D040683 ORTHO05D003587 1.9e-06 58.2 142 26.8
Glyma.15G224002 Glycine max HOM05D003575 ORTHO05D003587 2.5e-06 57.8 73 38.4
EL10Ac9g22882 Beta vulgaris HOM05D003575 ORTHO05D003587 9.5e-06 55.8 74 32.4


User provided reference genes

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