Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 2.1e-160 568.9 280 100.0
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 1.1e-97 360.5 273 68.5
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 9.7e-97 357.5 278 66.5
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 2.8e-96 355.9 278 65.5
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.1e-95 354.0 276 67.0
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 2.4e-95 352.8 279 65.9
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 2.6e-94 349.4 295 64.4
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 7.7e-94 347.8 272 66.5
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 1.0e-93 347.4 297 63.6
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 1.7e-93 346.7 282 66.0
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 8.5e-93 344.4 277 65.0
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 2.5e-92 342.8 288 63.5
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 3.2e-92 342.4 289 62.3
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 1.2e-91 340.5 302 60.9
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 2.7e-91 339.3 262 68.3
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 8.8e-90 334.3 270 65.2
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 2.5e-89 332.8 274 64.2
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 9.7e-89 330.9 256 66.4
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 3.7e-88 328.9 292 58.6
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 4.8e-88 328.6 276 62.3
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 8.2e-88 327.8 299 59.2
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 1.8e-87 326.6 303 58.7
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 2.6e-86 322.8 264 62.9
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 3.4e-86 322.4 308 59.7
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 3.4e-86 322.4 304 56.9
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 1.1e-84 317.4 270 61.9
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 2.5e-84 316.2 291 59.8
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 3.2e-84 315.8 288 58.7
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 5.5e-84 315.1 295 58.0
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 7.2e-84 314.7 272 59.9
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 9.4e-84 314.3 268 61.2
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 1.2e-83 313.9 297 56.9
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 1.2e-83 313.9 232 68.1
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 1.2e-83 313.9 277 58.5
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.6e-83 313.5 272 60.3
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 1.6e-83 313.5 259 61.0
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 2.1e-83 313.2 299 56.2
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 2.7e-83 312.8 293 56.7
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 4.7e-83 312.0 264 62.1
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 6.1e-83 311.6 295 56.3
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 1.0e-82 310.8 303 56.1
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 1.8e-82 310.1 277 60.6
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 1.8e-82 310.1 295 57.3
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 1.8e-82 310.1 291 58.1
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 2.3e-82 309.7 271 60.1
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 3.0e-82 309.3 289 62.6
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 3.0e-82 309.3 280 60.7
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 3.9e-82 308.9 282 58.5
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 6.7e-82 308.1 289 59.2
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 6.7e-82 308.1 298 57.7
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 8.8e-82 307.8 298 55.7
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 8.8e-82 307.8 291 57.4
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 2.0e-81 306.6 292 57.2
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.0e-81 306.6 261 62.5
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 2.6e-81 306.2 261 62.8
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 3.3e-81 305.8 291 56.4
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 3.3e-81 305.8 291 56.4
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 4.4e-81 305.4 282 57.4
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 4.4e-81 305.4 267 56.9
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 5.7e-81 305.1 266 58.6
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 9.7e-81 304.3 295 56.3
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 1.3e-80 303.9 286 58.4
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 1.7e-80 303.5 295 56.3
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 1.7e-80 303.5 280 58.6
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 2.2e-80 303.1 281 59.8
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 1.8e-79 300.1 282 59.2
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 5.3e-79 298.5 293 54.6
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 7.0e-79 298.1 265 57.4
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 9.1e-79 297.7 212 70.8
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 9.1e-79 297.7 292 57.5
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 1.5e-78 297.0 298 57.4
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 2.6e-78 296.2 273 58.6
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 3.5e-78 295.8 292 57.5
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 5.9e-78 295.0 288 54.9
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 2.2e-77 293.1 207 72.0
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 3.8e-77 292.4 304 53.6
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 6.5e-77 291.6 266 59.0
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 8.5e-77 291.2 195 71.8
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 8.5e-77 291.2 300 54.3
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 1.1e-76 290.8 209 70.8
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 7.2e-76 288.1 206 70.9
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 4.7e-75 285.4 313 52.7
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 6.1e-75 285.0 202 67.8
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 8.0e-75 284.6 204 67.6
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 1.0e-74 284.3 293 54.6
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 2.3e-74 283.1 275 56.0
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 8.8e-74 281.2 276 56.2
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 8.8e-74 281.2 205 67.8
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 1.1e-73 280.8 202 67.3
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 1.5e-73 280.4 285 55.8
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 3.3e-73 279.3 278 56.1
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 3.3e-73 279.3 278 56.1
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 9.7e-73 277.7 288 52.8
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 2.2e-72 276.6 214 65.0
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 6.3e-72 275.0 297 51.5
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 8.2e-72 274.6 299 54.8
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 1.4e-71 273.9 300 53.0
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 1.8e-71 273.5 205 66.8
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 5.3e-71 271.9 285 55.8
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 7.0e-71 271.6 208 64.4
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 7.0e-71 271.6 208 64.4
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.6e-70 269.6 209 63.2
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 3.8e-69 265.8 212 62.7
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 5.5e-68 261.9 202 63.4
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 5.5e-68 261.9 218 61.9
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 8.0e-67 258.1 260 54.6
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 7.5e-65 251.5 201 62.2
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 8.5e-61 238.0 227 59.9
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 5.7e-57 225.3 200 59.5
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 2.8e-56 223.0 210 58.6
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 1.4e-55 220.7 200 56.5
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 2.9e-53 213.0 197 55.3
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 8.6e-53 211.5 194 52.1
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 2.5e-52 209.9 211 53.6
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 2.0e-46 190.3 165 58.8
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 6.1e-43 178.7 226 42.9
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 1.3e-40 171.0 240 40.8
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 2.4e-39 166.8 203 51.2
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 7.0e-39 165.2 205 42.4
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.2e-38 164.5 216 48.6
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.5e-38 162.9 172 52.9
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 7.8e-38 161.8 210 41.9
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 4.3e-36 156.0 167 50.9
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 1.2e-33 147.9 225 43.6
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 6.6e-29 132.1 108 61.1
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 5.8e-25 119.0 119 52.9
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 1.1e-20 104.8 135 44.4
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 2.5e-20 103.6 165 40.0
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 6.2e-19 99.0 57 75.4
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 2.6e-17 93.6 51 78.4
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 4.4e-17 92.8 79 59.5
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 1.1e-15 88.2 78 56.4
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 3.2e-15 86.7 206 33.0
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.3e-13 80.5 87 46.0


User provided reference genes

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