Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 1.9e-98 362.5 181 100.0
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 1.2e-92 343.2 180 95.0
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 1.7e-73 279.6 179 79.3
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 2.8e-73 278.9 179 79.9
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.1e-72 276.9 179 77.1
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.4e-72 276.6 179 79.3
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.8e-72 276.2 179 78.2
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.8e-72 276.2 179 78.2
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 4.1e-72 275.0 179 78.8
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.1e-72 275.0 179 78.8
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 4.1e-72 275.0 167 80.8
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 5.3e-72 274.6 179 76.5
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.3e-72 274.6 168 82.1
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.3e-72 274.6 168 82.1
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 1.2e-71 273.5 179 78.2
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.2e-71 273.5 179 77.7
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 1.5e-71 273.1 179 78.2
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 1.5e-71 273.1 179 78.2
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 2.0e-71 272.7 167 81.4
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 2.0e-71 272.7 168 81.0
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.0e-71 272.7 179 76.5
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.5e-71 271.9 179 78.2
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.5e-71 271.9 179 77.7
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 3.5e-71 271.9 180 77.8
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 3.5e-71 271.9 178 76.4
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 4.5e-71 271.6 167 79.6
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 4.5e-71 271.6 168 81.0
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 4.5e-71 271.6 180 77.8
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.9e-71 271.2 179 78.2
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 7.7e-71 270.8 168 79.8
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 7.7e-71 270.8 168 80.4
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 7.7e-71 270.8 179 77.7
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 1.3e-70 270.0 179 77.1
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 1.3e-70 270.0 170 78.8
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.3e-70 270.0 171 79.5
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.9e-70 268.9 179 78.2
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 6.5e-70 267.7 168 79.8
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 8.5e-70 267.3 174 78.7
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 8.5e-70 267.3 179 77.1
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 8.5e-70 267.3 176 76.7
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 8.5e-70 267.3 179 76.5
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.1e-69 266.9 171 78.9
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.1e-69 266.9 171 78.4
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 76.5
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 2.5e-69 265.8 168 80.4
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 2.5e-69 265.8 179 76.5
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.5e-69 265.8 169 78.7
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 2.5e-69 265.8 170 77.1
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 77.7
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 7.2e-69 264.2 168 79.2
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 9.4e-69 263.8 179 76.5
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.6e-68 263.1 166 77.7
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 1.6e-68 263.1 170 77.1
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.1e-68 262.7 167 79.6
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 2.1e-68 262.7 168 77.4
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 2.7e-68 262.3 179 76.0
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 2.7e-68 262.3 179 76.0
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.7e-68 262.3 179 74.3
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 6.1e-68 261.2 168 79.8
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 6.1e-68 261.2 206 68.0
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 1.0e-67 260.4 179 73.7
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.0e-67 260.4 179 75.4
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.4e-67 260.0 168 78.6
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 2.3e-67 259.2 168 78.0
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 6.7e-67 257.7 168 78.6
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 6.7e-67 257.7 179 73.2
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 8.8e-67 257.3 166 77.7
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 1.1e-66 256.9 177 74.6
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.5e-66 256.5 168 78.0
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 2.0e-66 256.1 176 73.3
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 2.6e-66 255.8 166 76.5
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 3.3e-66 255.4 174 73.6
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 4.4e-66 255.0 179 73.7
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.4e-66 255.0 169 75.7
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 5.7e-66 254.6 171 76.6
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 5.7e-66 254.6 177 71.2
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 5.7e-66 254.6 166 75.9
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 9.7e-66 253.8 177 72.9
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.7e-65 253.1 179 74.3
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.7e-65 253.1 168 76.2
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.2e-65 252.7 171 76.0
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 2.2e-65 252.7 168 74.4
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 3.7e-65 251.9 168 77.4
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 1.1e-64 250.4 175 72.6
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 1.1e-64 250.4 179 72.6
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.8e-64 249.6 174 73.0
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 1.8e-64 249.6 175 72.6
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 3.1e-64 248.8 182 71.4
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 3.1e-64 248.8 170 73.5
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 4.1e-64 248.4 179 69.8
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.1e-64 248.4 177 71.8
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 7.0e-64 247.7 168 75.6
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 9.1e-64 247.3 171 73.7
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.2e-63 246.9 220 62.3
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 2.6e-63 245.7 168 75.0
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 3.5e-63 245.4 175 73.1
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 3.5e-63 245.4 161 78.3
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 3.5e-63 245.4 168 74.4
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 4.5e-63 245.0 179 71.5
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 5.9e-63 244.6 168 74.4
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 7.7e-63 244.2 168 73.8
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 7.7e-63 244.2 168 75.0
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 7.7e-63 244.2 177 70.6
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 7.7e-63 244.2 168 73.8
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 1.3e-62 243.4 179 69.8
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 3.8e-62 241.9 168 74.4
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 6.5e-62 241.1 171 71.3
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 6.5e-62 241.1 168 70.8
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 8.5e-62 240.7 168 73.8
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 1.1e-61 240.4 175 69.7
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.5e-61 240.0 168 73.8
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 3.2e-61 238.8 168 72.0
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 4.2e-61 238.4 168 72.0
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 7.2e-61 237.7 212 63.7
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 2.7e-60 235.7 171 70.2
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 3.6e-60 235.3 169 71.6
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 1.0e-59 233.8 171 69.6
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 4.0e-59 231.9 168 71.4
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 5.2e-59 231.5 158 77.2
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 3.3e-58 228.8 167 70.7
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 3.3e-58 228.8 148 78.4
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 9.7e-58 227.3 148 77.7
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 4.8e-57 224.9 144 78.5
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 6.3e-57 224.6 160 71.9
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 8.3e-57 224.2 168 71.4
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 1.3e-54 216.9 169 66.3
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 7.2e-53 211.1 175 62.9
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 3.5e-47 192.2 131 75.6
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 4.5e-47 191.8 116 83.6
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.6e-44 183.3 169 61.5
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.8e-44 182.6 115 80.0
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 6.1e-44 181.4 171 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 4.0e-43 178.7 162 55.6
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 1.7e-41 173.3 162 54.3
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 1.7e-41 173.3 115 73.0
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 3.1e-40 169.1 172 51.7
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 2.7e-39 166.0 175 52.0
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 1.7e-38 163.3 166 50.0
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.0e-35 152.1 166 55.4
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 3.7e-33 145.6 96 76.0
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 4.9e-33 145.2 222 40.1
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 8.3e-33 144.4 175 46.9
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 8.3e-33 144.4 160 49.4
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 1.4e-32 143.7 85 82.4
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.2e-32 142.5 191 49.2
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 3.5e-31 139.0 82 81.7
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 3.9e-30 135.6 114 64.9
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 1.1e-29 134.0 83 75.9
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 5.6e-29 131.7 164 45.7
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 1.6e-28 130.2 86 70.9
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 6.2e-28 128.3 115 64.3
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 1.4e-27 127.1 138 51.4
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 3.4e-26 122.5 94 69.1
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 9.8e-26 120.9 84 71.4
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 2.7e-23 112.8 98 66.3
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 3.0e-22 109.4 75 76.0
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 1.9e-21 106.7 81 64.2
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 1.4e-16 90.5 136 45.6
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 1.9e-13 80.1 50 76.0
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 1.6e-12 77.0 232 30.6
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 3.4e-10 69.3 51 60.8
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 7.6e-10 68.2 42 69.0
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 1.3e-09 67.4 53 62.3
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 1.7e-09 67.0 84 47.6
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 1.9e-08 63.5 147 35.4


User provided reference genes

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