Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.4e-136 489.6 249 100.0
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 9.8e-93 344.0 236 72.0
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 4.1e-91 338.6 237 72.6
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 9.2e-91 337.4 240 71.7
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 1.2e-90 337.0 251 68.9
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 2.7e-90 335.9 241 69.7
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.8e-90 334.3 247 70.0
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.3e-89 333.6 240 70.4
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.3e-89 332.8 245 69.0
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.9e-89 332.0 238 71.4
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 3.9e-89 332.0 240 71.2
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.5e-88 330.1 244 70.1
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 5.6e-88 328.2 240 68.8
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.1e-87 326.2 244 69.3
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.6e-87 325.5 249 67.1
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 3.6e-87 325.5 247 68.8
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 4.7e-87 325.1 241 68.0
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 1.8e-86 323.2 240 69.2
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 1.8e-86 323.2 240 69.2
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.8e-86 323.2 238 68.1
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.8e-86 323.2 238 68.1
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 6.8e-86 321.2 243 69.1
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 6.8e-86 321.2 236 69.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 6.8e-86 321.2 236 70.3
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.5e-85 320.1 236 67.4
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.0e-85 319.7 236 67.4
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.0e-85 319.7 243 68.7
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.4e-85 318.9 240 66.2
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.3e-84 317.0 240 69.2
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 1.7e-84 316.6 239 67.4
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.2e-84 316.2 247 68.0
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 6.4e-84 314.7 240 66.7
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 6.4e-84 314.7 241 67.2
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 8.3e-84 314.3 239 66.1
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.9e-83 313.2 237 69.2
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 4.1e-83 312.0 240 68.3
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 4.1e-83 312.0 240 67.9
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 5.4e-83 311.6 247 65.2
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.2e-82 310.5 253 66.0
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 3.5e-82 308.9 238 67.6
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 3.5e-82 308.9 245 64.5
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 7.8e-82 307.8 237 68.4
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.0e-81 307.4 236 66.9
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.7e-81 306.6 237 67.5
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.7e-81 306.6 220 71.8
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 1.7e-81 306.6 244 66.4
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 5.1e-81 305.1 220 69.5
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 5.1e-81 305.1 245 64.9
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.5e-80 303.5 238 67.2
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 1.9e-80 303.1 253 61.3
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.5e-80 302.8 238 64.7
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 2.5e-80 302.8 233 65.7
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 3.3e-80 302.4 245 62.9
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.3e-80 302.4 250 63.2
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 9.5e-80 300.8 241 66.0
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.2e-79 300.4 236 65.7
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.6e-79 300.1 237 65.0
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 1.6e-79 300.1 250 62.4
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 2.8e-79 299.3 230 66.1
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 8.1e-79 297.7 243 64.2
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 8.1e-79 297.7 241 63.9
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 3.1e-78 295.8 247 65.6
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 4.0e-78 295.4 249 65.5
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 4.0e-78 295.4 249 65.5
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 1.5e-77 293.5 250 64.0
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.5e-77 293.5 250 64.0
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 2.0e-77 293.1 258 60.5
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 5.8e-77 291.6 240 62.1
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 5.8e-77 291.6 196 73.5
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 7.6e-77 291.2 240 63.8
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 7.6e-77 291.2 240 63.8
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 7.6e-77 291.2 236 64.4
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 9.9e-77 290.8 279 56.6
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 2.9e-76 289.3 248 61.3
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 4.9e-76 288.5 250 63.2
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.4e-75 287.0 235 66.8
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 2.4e-75 286.2 222 67.6
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 2.4e-75 286.2 253 59.7
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 4.1e-75 285.4 182 76.4
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 9.2e-75 284.3 242 60.3
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.2e-74 283.9 239 59.8
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.0e-74 281.6 182 75.3
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 1.3e-73 280.4 237 63.3
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.7e-73 280.0 182 75.3
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.7e-73 280.0 249 60.2
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 2.3e-73 279.6 186 71.5
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 2.3e-73 279.6 246 59.8
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 2.3e-73 279.6 236 61.9
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 6.6e-73 278.1 236 61.4
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 8.7e-73 277.7 179 74.9
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.5e-72 276.9 238 58.8
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.3e-72 275.4 236 58.9
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 4.3e-72 275.4 179 74.3
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 7.3e-72 274.6 240 60.0
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 9.6e-72 274.2 237 57.8
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 9.6e-72 274.2 182 73.6
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 3.6e-71 272.3 220 66.4
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 4.7e-71 271.9 236 60.6
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 6.2e-71 271.6 240 60.8
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 8.1e-71 271.2 233 60.5
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 1.1e-70 270.8 182 73.6
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.8e-70 270.0 245 56.3
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 4.0e-70 268.9 267 55.4
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 4.0e-70 268.9 269 58.0
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 5.2e-70 268.5 183 72.1
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 9.0e-70 267.7 185 70.3
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 9.0e-70 267.7 185 70.3
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 1.5e-69 266.9 216 66.2
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.5e-69 266.9 267 55.1
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 2.0e-69 266.5 183 72.7
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 3.4e-69 265.8 233 59.7
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 5.8e-69 265.0 182 73.1
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.7e-68 263.5 265 55.1
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 3.8e-68 262.3 179 70.4
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.1e-67 260.8 269 55.4
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 2.4e-67 259.6 233 55.8
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 3.2e-67 259.2 166 74.1
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 7.1e-67 258.1 265 52.8
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 9.3e-67 257.7 220 62.3
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 1.2e-66 257.3 182 68.7
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 4.6e-66 255.4 231 55.4
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 4.6e-66 255.4 185 69.2
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 6.0e-66 255.0 183 69.4
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 6.6e-65 251.5 234 56.4
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 4.3e-64 248.8 183 66.1
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 4.3e-64 248.8 194 63.4
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 8.1e-63 244.6 244 54.5
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 4.0e-62 242.3 336 44.6
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 9.0e-62 241.1 188 64.4
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 1.2e-61 240.7 189 67.2
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.0e-61 240.0 186 66.1
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 4.5e-61 238.8 183 65.0
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 4.5e-61 238.8 183 65.0
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.6e-58 230.3 246 50.0
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 2.3e-57 226.5 233 52.4
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.0e-57 226.1 162 67.9
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 6.7e-57 224.9 187 62.6
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 6.7e-57 224.9 175 61.1
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 1.9e-56 223.4 230 51.7
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 2.5e-56 223.0 182 63.2
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.2e-55 218.4 126 82.5
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 1.5e-53 213.8 168 68.5
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.3e-52 210.7 213 54.9
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.3e-52 210.7 213 54.9
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 9.3e-51 204.5 131 71.8
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.5e-50 202.6 137 73.0
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.5e-48 196.4 139 68.3
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 7.6e-45 184.9 124 70.2
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 2.2e-44 183.3 127 65.4
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 1.3e-39 167.5 205 45.9
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.0e-33 147.9 199 40.7
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.1e-27 127.9 116 56.9
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 4.2e-27 125.9 109 65.1
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 2.2e-23 113.6 100 55.0
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 7.0e-22 108.6 142 43.0
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.6e-18 97.4 170 33.5
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 6.7e-17 92.0 72 59.7
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 1.8e-14 84.0 60 63.3
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 4.2e-11 72.8 48 62.5


User provided reference genes

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