Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 7.3e-225 783.5 377 100.0
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 3.0e-133 479.2 371 65.5
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 2.8e-131 472.6 357 66.7
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 6.2e-131 471.5 344 69.8
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 8.9e-130 467.6 330 68.5
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 1.5e-129 466.8 358 66.2
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 2.0e-129 466.5 370 64.1
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 3.4e-129 465.7 360 65.8
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.7e-128 463.4 384 62.2
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 2.9e-128 462.6 331 68.3
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 1.2e-126 457.2 327 69.7
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 6.0e-126 454.9 334 66.8
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 7.8e-126 454.5 337 67.4
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 1.7e-125 453.4 337 68.0
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 2.3e-125 453.0 331 68.9
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 3.9e-125 452.2 337 65.6
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 5.1e-125 451.8 329 67.8
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 6.6e-125 451.4 330 69.7
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 6.6e-125 451.4 323 68.7
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 8.6e-125 451.1 331 66.8
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.1e-124 450.7 337 66.2
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.9e-124 449.9 374 62.0
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 1.9e-124 449.9 337 66.5
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.5e-124 449.5 327 66.4
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 9.6e-124 447.6 385 60.3
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.2e-123 447.2 336 65.5
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 2.1e-123 446.4 345 64.3
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 2.8e-123 446.0 326 67.2
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 2.8e-123 446.0 315 68.9
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 4.7e-123 445.3 320 68.8
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 8.1e-123 444.5 351 63.5
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.4e-122 443.7 385 60.0
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 1.4e-122 443.7 334 66.2
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 1.8e-122 443.4 337 65.3
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.4e-122 443.0 325 65.5
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.0e-122 442.2 330 66.4
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 5.2e-122 441.8 368 61.7
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 6.8e-122 441.4 245 83.3
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 1.2e-121 440.7 397 56.4
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.2e-121 440.7 338 64.2
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 2.0e-121 439.9 321 67.6
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 2.6e-121 439.5 352 63.4
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 5.8e-121 438.3 345 64.6
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 2.2e-120 436.4 352 63.1
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 2.9e-120 436.0 331 65.3
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 2.9e-120 436.0 331 65.3
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 4.9e-120 435.3 332 64.8
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 4.9e-120 435.3 331 65.3
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 4.9e-120 435.3 332 64.8
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 8.4e-120 434.5 319 65.8
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 1.9e-119 433.3 372 59.9
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 1.9e-119 433.3 351 62.4
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 3.2e-119 432.6 330 64.5
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 4.2e-119 432.2 336 64.6
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 5.4e-119 431.8 336 62.5
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.6e-118 430.3 337 64.4
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 7.8e-118 427.9 385 58.2
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 1.3e-117 427.2 339 63.7
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 1.3e-117 427.2 331 64.7
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.3e-117 427.2 335 63.9
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 2.3e-117 426.4 390 57.4
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.1e-116 424.1 322 65.5
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 1.1e-116 424.1 355 61.7
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 3.3e-116 422.5 313 66.5
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 3.3e-116 422.5 312 64.7
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 3.3e-116 422.5 352 61.6
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 7.3e-116 421.4 322 62.7
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 3.6e-115 419.1 378 58.5
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.1e-114 417.5 314 64.3
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 1.8e-114 416.8 341 62.2
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 1.8e-114 416.8 346 61.6
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 2.4e-114 416.4 314 65.3
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 2.4e-114 416.4 355 60.3
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 4.4e-113 412.1 336 62.2
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.7e-112 410.2 329 62.6
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 2.2e-112 409.8 333 63.4
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 8.4e-112 407.9 361 59.0
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 1.4e-111 407.1 363 58.1
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 7.1e-111 404.8 340 60.3
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 7.9e-110 401.4 321 62.3
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 1.0e-109 401.0 361 57.6
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 3.9e-109 399.1 334 60.8
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.5e-108 396.4 234 78.2
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 7.4e-108 394.8 347 60.2
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.1e-106 391.0 330 59.7
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 2.7e-102 376.3 330 59.1
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 9.6e-100 367.9 331 55.9
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 3.7e-99 365.9 240 71.7
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 4.8e-99 365.5 320 59.1
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 4.0e-98 362.5 380 52.1
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 5.8e-97 358.6 226 76.5
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 3.8e-96 355.9 322 57.8
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 4.2e-95 352.4 237 70.5
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 1.3e-93 347.4 193 81.9
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 2.2e-88 330.1 274 62.0
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.6e-86 323.9 247 64.0
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.8e-83 313.2 194 74.7
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 2.4e-82 310.1 313 50.5
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 5.3e-82 308.9 259 57.9
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.3e-80 304.3 280 55.4
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 6.7e-77 292.0 285 51.2
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 1.7e-72 277.3 279 50.2
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 8.5e-72 275.0 362 47.8
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 6.7e-69 265.4 196 60.7
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 1.0e-64 251.5 231 52.4
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 4.1e-58 229.6 124 83.9
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 5.0e-56 222.6 118 80.5
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 2.1e-54 217.2 303 43.6
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 1.2e-49 201.4 195 55.4
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 6.5e-48 195.7 194 53.1
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 3.6e-46 189.9 115 78.3
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 6.8e-45 185.7 113 77.0
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 3.7e-43 179.9 235 47.2
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 1.9e-39 167.5 273 39.6
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 6.8e-37 159.1 174 51.1
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 4.4e-36 156.4 99 73.7
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 1.6e-33 147.9 180 41.7
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.0e-32 142.9 175 48.0
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 4.1e-26 123.2 299 28.4
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 5.4e-26 122.9 61 85.2
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 1.7e-24 117.9 98 59.2
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 7.3e-23 112.5 75 73.3
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 2.6e-20 104.0 55 76.4
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 9.8e-20 102.1 64 78.1
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 2.9e-19 100.5 62 82.3
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 3.7e-19 100.1 204 36.3
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 5.4e-18 96.3 79 60.8
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 1.6e-17 94.7 184 35.3
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.3e-15 87.0 180 36.1
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 9.5e-15 85.5 208 35.1
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 2.0e-12 77.8 109 39.4
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 2.9e-11 73.9 107 38.3
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 1.0e-08 65.5 38 76.3
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 3.0e-08 63.9 38 78.9
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 5.1e-08 63.2 40 80.0


User provided reference genes

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