Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 2.7e-294 1014.6 518 100.0
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 6.8e-221 770.8 516 75.6
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 2.6e-220 768.8 515 72.8
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 5.7e-220 767.7 517 73.7
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 2.2e-219 765.8 517 74.3
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 1.1e-218 763.5 517 74.5
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 1.4e-218 763.1 517 74.3
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 1.4e-218 763.1 516 73.6
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 4.1e-218 761.5 518 74.3
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 2.7e-217 758.8 518 73.9
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 2.7e-217 758.8 515 72.6
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 2.7e-217 758.8 516 73.1
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 2.7e-217 758.8 517 74.3
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 5.9e-217 757.7 522 74.5
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 1.0e-216 756.9 524 72.1
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 1.7e-216 756.1 528 71.6
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 3.8e-216 755.0 521 74.5
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 6.6e-216 754.2 516 74.2
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 1.5e-215 753.1 517 73.1
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 1.2e-214 750.0 515 72.8
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.2e-214 750.0 513 71.5
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.6e-214 749.6 513 71.7
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 3.6e-214 748.4 513 71.5
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 4.7e-214 748.0 517 72.0
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 2.3e-213 745.7 516 72.3
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 4.0e-213 745.0 524 71.8
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.2e-212 743.4 516 72.5
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.6e-212 742.3 516 72.9
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 4.4e-212 741.5 517 71.8
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 5.7e-212 741.1 521 71.0
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 1.4e-210 736.5 516 72.3
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 1.4e-210 736.5 524 71.4
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.1e-210 734.9 516 71.5
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 9.2e-210 733.8 522 72.6
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 9.2e-210 733.8 572 66.8
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.5e-209 731.9 516 71.5
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 3.9e-208 728.4 535 69.0
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 1.9e-207 726.1 515 71.8
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 1.9e-207 726.1 515 70.7
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 9.5e-207 723.8 516 71.3
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 1.0e-205 720.3 516 69.6
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 1.4e-205 719.9 515 68.7
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 1.4e-205 719.9 496 73.4
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 1.8e-205 719.5 525 70.3
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 1.8e-205 719.5 515 68.5
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 3.7e-203 711.8 505 69.9
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 1.1e-202 710.3 518 68.3
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 4.6e-201 704.9 513 69.2
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 1.5e-199 699.9 517 66.7
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 5.6e-199 698.0 609 61.4
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 1.4e-197 693.3 515 66.4
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 2.2e-195 686.0 522 68.0
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 6.4e-195 684.5 515 64.9
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 2.7e-193 679.1 529 64.8
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 4.6e-193 678.3 519 65.7
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 6.0e-193 677.9 522 64.6
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 1.9e-191 672.9 515 64.5
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 4.3e-191 671.8 515 65.0
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 4.3e-191 671.8 514 66.3
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 9.9e-188 660.6 519 64.9
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 3.8e-187 658.7 540 63.0
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 3.8e-187 658.7 515 65.4
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 4.9e-187 658.3 507 66.5
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 9.2e-186 654.1 533 63.6
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 2.1e-185 652.9 518 64.7
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 4.6e-185 651.7 520 64.4
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 3.0e-184 649.0 520 61.5
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 5.6e-183 644.8 535 62.4
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 4.7e-182 641.7 533 62.7
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 1.2e-180 637.1 520 60.6
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.1e-178 630.6 521 60.3
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 2.7e-177 625.9 525 61.9
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 3.9e-176 622.1 388 79.4
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 6.6e-176 621.3 570 58.1
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 4.3e-175 618.6 473 67.4
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 8.1e-174 614.4 527 58.6
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 4.0e-173 612.1 537 60.1
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 3.4e-172 609.0 466 67.0
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 1.7e-171 606.7 526 60.6
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 2.9e-171 605.9 526 60.5
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 2.9e-171 605.9 526 60.5
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 2.9e-171 605.9 526 60.5
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 1.4e-170 603.6 526 60.3
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.1e-169 599.7 473 64.3
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.8e-168 596.7 563 58.8
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 8.4e-163 577.8 513 58.7
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.2e-155 553.1 404 67.6
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 3.3e-151 539.3 513 55.6
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.2e-150 534.6 369 71.3
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 5.9e-148 528.5 360 73.9
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 2.6e-127 459.9 563 49.4
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 1.8e-125 453.8 277 80.5
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 5.7e-119 432.2 504 49.4
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.2e-111 407.9 475 51.4
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 1.4e-109 401.0 534 41.6
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 1.6e-108 397.5 519 42.4
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 2.1e-105 387.1 544 41.7
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.8e-101 374.0 498 45.2
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 2.9e-99 366.7 254 69.3
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.2e-95 354.8 559 37.4
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 1.3e-94 351.3 254 68.1
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.7e-83 314.3 269 60.2
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 1.8e-80 304.3 243 63.4
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 3.4e-79 300.1 210 71.0
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 9.9e-79 298.5 206 70.4
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 5.1e-75 286.2 468 40.6
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.8e-73 280.4 221 66.5
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 6.6e-67 259.2 263 46.0
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 3.6e-65 253.4 223 57.0
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 2.2e-62 244.2 246 48.8
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 4.6e-60 236.5 221 57.5
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 1.8e-56 224.6 187 60.4
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.6e-52 211.5 492 27.6
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.7e-46 191.4 251 48.2
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 1.4e-45 188.3 161 57.8
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 5.5e-45 186.4 442 33.0
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 4.8e-41 173.3 180 47.2
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 5.8e-39 166.4 263 41.8
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 1.8e-35 154.8 525 29.5
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 9.4e-29 132.5 103 60.2
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.0e-27 129.0 106 58.5
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 9.1e-24 115.9 87 67.8
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 5.9e-23 113.2 185 37.3
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 5.9e-23 113.2 121 51.2
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.9e-22 110.9 102 59.8
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 2.1e-20 104.8 126 50.0
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 3.9e-19 100.5 181 40.3
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 1.5e-15 88.6 52 67.3
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 4.4e-10 70.5 77 46.8
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.2e-07 62.4 34 79.4
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 3.5e-07 60.8 73 43.8
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 6.5e-06 56.6 46 60.9


User provided reference genes

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