Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 1.6e-50 202.6 115 100.0
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 7.1e-46 187.2 115 88.7
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 9.0e-41 170.2 111 88.3
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 9.0e-33 143.7 111 66.7
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 9.0e-33 143.7 111 67.6
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.2e-32 143.3 111 68.5
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 2.0e-32 142.5 110 68.2
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 4.5e-32 141.4 111 69.4
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 7.6e-32 140.6 111 66.7
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 7.6e-32 140.6 111 67.6
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 1.0e-31 140.2 111 67.6
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 1.3e-31 139.8 111 66.7
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 4.9e-31 137.9 111 65.8
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 6.5e-31 137.5 111 66.7
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 6.5e-31 137.5 110 67.3
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 8.4e-31 137.1 111 65.8
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 1.1e-30 136.7 110 67.3
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 1.9e-30 136.0 111 65.8
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.5e-30 135.6 111 64.0
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 2.5e-30 135.6 111 65.8
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.2e-30 134.8 111 63.1
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 5.5e-30 134.4 110 65.5
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 5.5e-30 134.4 111 63.1
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 7.1e-30 134.0 111 65.8
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 9.3e-30 133.7 111 64.0
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 9.3e-30 133.7 111 63.1
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 1.2e-29 133.3 110 65.5
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.6e-29 132.9 111 62.2
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.6e-29 132.9 111 62.2
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.6e-29 132.9 111 64.0
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.1e-29 132.5 110 64.5
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.7e-29 132.1 110 64.5
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 2.7e-29 132.1 111 63.1
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 3.5e-29 131.7 110 64.5
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 6.0e-29 131.0 111 62.2
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 1.0e-28 130.2 110 63.6
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.3e-28 129.8 111 64.0
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 1.3e-28 129.8 111 63.1
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 2.3e-28 129.0 111 62.2
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 6.7e-28 127.5 111 64.0
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 8.7e-28 127.1 112 64.3
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.9e-27 125.9 111 62.2
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.3e-27 125.2 110 61.8
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.3e-27 124.8 111 63.1
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 4.3e-27 124.8 111 61.3
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 5.7e-27 124.4 111 63.1
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 5.7e-27 124.4 111 62.2
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 9.6e-27 123.6 111 61.3
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 2.1e-26 122.5 114 61.4
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 2.8e-26 122.1 111 60.4
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 2.8e-26 122.1 113 61.9
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 2.8e-26 122.1 110 60.9
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 6.3e-26 120.9 113 61.1
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 8.2e-26 120.6 113 61.1
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 1.1e-25 120.2 111 59.5
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 1.1e-25 120.2 112 58.0
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.4e-25 119.8 111 59.5
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.4e-25 119.0 112 58.0
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.4e-25 119.0 112 58.0
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.1e-25 118.6 111 59.5
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.1e-25 118.6 112 58.0
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 3.1e-25 118.6 113 60.2
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 3.1e-25 118.6 111 58.6
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 4.1e-25 118.2 111 57.7
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.0e-25 117.1 112 57.1
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 9.0e-25 117.1 110 60.9
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.2e-24 116.7 111 60.4
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.2e-24 116.7 110 54.5
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 1.5e-24 116.3 113 59.3
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 2.0e-24 115.9 110 55.5
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.0e-24 115.9 111 57.7
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 3.4e-24 115.2 111 55.0
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 3.4e-24 115.2 112 59.8
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 4.5e-24 114.8 110 57.3
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.0e-23 113.6 111 61.3
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.0e-23 113.6 111 55.0
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 1.0e-23 113.6 117 58.1
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.3e-23 113.2 113 59.3
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 2.9e-23 112.1 111 58.6
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 1.6e-21 106.3 111 55.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 3.5e-21 105.1 111 55.0
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.8e-20 102.8 111 55.0
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 5.1e-20 101.3 111 55.0
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.9e-19 99.4 111 54.1
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 1.9e-19 99.4 109 47.7
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 2.5e-19 99.0 111 52.3
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 2.5e-19 99.0 111 52.3
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 3.3e-19 98.6 111 52.3
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 3.3e-19 98.6 111 52.3
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 3.3e-19 98.6 111 52.3
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 3.3e-19 98.6 111 52.3
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 3.3e-19 98.6 111 53.2
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 4.3e-19 98.2 105 53.3
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 7.4e-19 97.4 111 49.5
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 7.4e-19 97.4 111 55.0
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 1.3e-18 96.7 111 52.3
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 2.2e-18 95.9 111 52.3
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 1.8e-17 92.8 111 54.1
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 4.1e-17 91.7 105 49.5
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 5.3e-17 91.3 110 52.7
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 6.9e-17 90.9 83 59.0
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 6.9e-17 90.9 105 51.4
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.9e-17 90.9 79 59.5
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 6.9e-17 90.9 111 53.2
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 1.5e-16 89.7 110 47.3
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.0e-16 89.4 111 47.7
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.0e-16 89.4 111 47.7
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.6e-16 89.0 82 58.5
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.6e-16 89.0 82 58.5
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.6e-16 89.0 82 58.5
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.6e-16 89.0 82 58.5
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 4.5e-16 88.2 86 58.1
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 5.9e-16 87.8 111 49.5
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 1.0e-15 87.0 105 45.7
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 8.5e-15 84.0 82 56.1
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.4e-14 83.2 111 45.0
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.5e-14 82.4 111 45.0
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.6e-13 78.2 103 45.6
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.1e-13 77.8 56 67.9
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.8e-12 76.3 103 46.6
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 2.0e-11 72.8 59 66.1
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 1.3e-10 70.1 81 50.6
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 2.0e-08 62.8 59 54.2
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 2.2e-07 59.3 77 45.5
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.9e-07 58.9 92 48.9
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.9e-07 58.9 92 48.9


User provided reference genes

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