Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 0.0e+00 1100.1 537 100.0
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 1.9e-271 938.7 535 83.6
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 5.7e-271 937.2 535 84.3
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 1.6e-270 935.6 535 84.3
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 2.2e-270 935.3 535 83.9
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 4.8e-270 934.1 535 83.9
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 4.8e-270 934.1 537 82.9
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.4e-269 932.6 535 83.7
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 1.8e-269 932.2 535 83.9
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 2.4e-269 931.8 534 83.9
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 5.3e-269 930.6 535 83.7
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.2e-268 929.5 539 84.6
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.2e-268 929.5 542 83.0
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 4.5e-268 927.5 535 82.4
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 4.5e-268 927.5 535 82.4
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.3e-267 926.0 535 83.0
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 2.9e-267 924.9 535 82.8
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 3.8e-267 924.5 535 83.4
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 5.0e-267 924.1 535 82.6
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 5.0e-267 924.1 535 82.1
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 1.9e-266 922.2 537 82.7
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 3.2e-266 921.4 535 82.1
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 4.2e-266 921.0 539 83.3
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 9.4e-266 919.8 540 81.1
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 1.2e-265 919.5 535 81.7
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.2e-265 919.5 535 81.9
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 1.6e-265 919.1 535 82.1
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 1.6e-265 919.1 535 81.5
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.6e-265 917.9 535 81.7
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 1.4e-264 916.0 536 82.6
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 2.3e-264 915.2 535 82.4
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 3.9e-264 914.4 535 81.5
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 8.8e-264 913.3 535 81.7
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 8.8e-264 913.3 529 83.0
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 1.1e-263 912.9 535 81.7
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 1.5e-263 912.5 535 81.3
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 2.5e-263 911.8 537 81.6
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 2.5e-263 911.8 536 82.5
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 2.5e-263 911.8 537 81.2
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 3.3e-263 911.4 535 81.9
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 1.7e-262 909.1 537 81.0
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 2.2e-262 908.7 535 82.1
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 3.7e-262 907.9 535 81.3
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 4.8e-262 907.5 535 80.9
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 8.2e-262 906.7 535 81.7
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.1e-261 906.4 535 81.5
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 1.1e-261 906.4 535 80.9
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.8e-261 905.6 535 80.9
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 2.4e-261 905.2 535 81.7
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 3.1e-261 904.8 531 81.7
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 4.1e-261 904.4 529 81.5
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 1.2e-260 902.9 535 81.9
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 1.5e-260 902.5 535 80.9
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 2.0e-260 902.1 535 80.9
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 2.6e-260 901.7 535 80.6
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 2.6e-260 901.7 536 81.5
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 4.5e-260 901.0 535 80.6
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.0e-259 899.8 535 80.9
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.0e-259 899.8 535 80.9
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 1.0e-259 899.8 537 80.4
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 1.7e-259 899.0 535 80.4
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 1.7e-259 899.0 535 80.4
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 3.8e-259 897.9 536 80.2
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 5.0e-259 897.5 535 79.8
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 6.5e-259 897.1 525 81.5
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 3.2e-258 894.8 535 80.0
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 5.5e-258 894.0 535 80.7
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 7.2e-258 893.6 536 79.9
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 9.4e-258 893.3 536 79.9
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 2.1e-257 892.1 535 80.0
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 2.7e-257 891.7 535 80.4
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 2.7e-257 891.7 536 78.9
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 2.7e-257 891.7 535 80.0
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 2.7e-257 891.7 535 79.4
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 4.7e-257 891.0 534 80.1
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 7.9e-257 890.2 535 80.2
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 1.4e-256 889.4 529 80.3
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 1.8e-256 889.0 529 80.0
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 2.3e-256 888.6 535 80.2
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 2.3e-256 888.6 538 79.2
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 3.9e-256 887.9 533 79.7
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 5.1e-256 887.5 535 79.8
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 8.8e-256 886.7 536 79.9
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 5.7e-255 884.0 536 79.3
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 5.7e-255 884.0 533 79.2
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 9.7e-255 883.2 537 78.4
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 3.7e-254 881.3 534 79.8
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 6.3e-254 880.6 536 78.5
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 1.1e-253 879.8 536 79.9
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 1.4e-253 879.4 536 79.3
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 1.8e-253 879.0 536 78.7
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 9.1e-253 876.7 528 79.2
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 1.2e-252 876.3 535 78.7
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 1.5e-252 875.9 535 79.3
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.5e-252 875.9 536 78.9
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 1.5e-252 875.9 535 78.7
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 5.9e-252 874.0 536 78.7
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 6.5e-251 870.5 536 78.7
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 8.5e-251 870.2 535 77.6
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 2.7e-249 865.1 526 77.6
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 1.4e-248 862.8 526 78.3
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 2.3e-248 862.1 550 76.9
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 3.9e-248 861.3 530 77.7
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 5.2e-248 860.9 550 76.7
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 2.2e-246 855.5 533 77.7
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 2.8e-246 855.1 529 76.0
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 5.3e-245 850.9 498 83.3
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 2.2e-243 845.5 682 64.2
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 3.2e-242 841.6 494 82.6
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 3.0e-240 835.1 535 76.6
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.5e-239 832.8 493 81.5
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 1.2e-233 813.1 666 63.8
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 2.0e-231 805.8 539 72.7
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 2.6e-231 805.4 531 71.8
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.8e-230 802.0 559 69.6
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 1.2e-228 796.6 525 71.2
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 2.7e-228 795.4 526 72.4
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 1.7e-219 766.1 536 68.5
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.4e-216 756.5 525 67.6
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 7.8e-212 740.7 527 65.3
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 5.6e-210 734.6 536 70.0
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 4.6e-204 714.9 525 65.5
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 5.6e-202 708.0 441 79.1
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 3.6e-201 705.3 526 63.9
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 8.6e-195 684.1 403 80.1
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 5.4e-189 664.8 497 65.8
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 1.3e-182 643.7 364 84.3
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.9e-178 629.8 495 65.9
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 8.1e-169 597.8 420 70.5
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 3.7e-161 572.4 710 48.7
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 9.1e-144 514.6 299 81.9
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.4e-136 490.7 537 50.7
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 5.3e-128 462.2 312 72.8
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 5.2e-123 445.7 526 49.2
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 1.3e-105 387.9 411 51.6
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 3.5e-95 353.2 262 67.6
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 3.8e-81 306.6 184 78.8
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 2.1e-60 237.7 148 75.7
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 6.2e-60 236.1 148 75.0
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 2.5e-48 197.6 105 94.3
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 8.2e-44 182.6 138 64.5
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 1.3e-38 165.2 166 50.0
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 3.0e-38 164.1 109 73.4
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 1.6e-36 158.3 94 77.7
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 1.7e-33 148.3 108 68.5
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 1.5e-21 108.6 94 62.8
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 5.3e-19 100.1 102 54.9
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 1.3e-12 79.0 46 76.1
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 4.8e-12 77.0 58 65.5
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 7.7e-10 69.7 42 78.6
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 7.7e-10 69.7 42 78.6
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 8.5e-09 66.2 44 72.7
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 1.9e-08 65.1 47 70.2
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 2.7e-07 61.2 75 54.7
Ca_12957_v3 Cicer arietinum L. HOM05D004282 ORTHO05D149096 3.6e-07 60.8 47 61.7
Hund19014 Selenicereus undatus HOM05D003983 ORTHO05D004562 1.4e-06 58.9 203 25.1
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 1.8e-06 58.5 40 70.0


User provided reference genes

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