Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 5.3e-205 717.6 400 100.0
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 3.7e-150 535.4 341 77.1
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.1e-149 533.9 344 76.7
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 3.1e-149 532.3 341 76.5
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 3.1e-149 532.3 341 77.1
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 1.0e-147 527.3 340 76.8
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.7e-145 519.2 341 74.5
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 3.6e-145 518.8 345 75.1
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 1.4e-144 516.9 341 75.4
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 1.4e-144 516.9 340 75.0
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 2.8e-142 509.2 343 73.8
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 8.3e-142 507.7 340 75.0
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 9.1e-141 504.2 341 72.7
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.6e-140 503.4 341 73.3
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 2.7e-140 502.7 334 73.1
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 2.9e-139 499.2 319 76.2
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 3.8e-139 498.8 340 72.9
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 6.5e-139 498.0 340 71.8
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 8.5e-139 497.7 338 71.9
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.1e-138 497.3 324 74.1
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 3.2e-138 495.7 330 73.6
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 4.2e-138 495.4 340 71.5
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 5.5e-138 495.0 319 74.9
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 7.2e-138 494.6 341 71.0
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 2.7e-137 492.7 331 71.3
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.7e-137 492.7 338 71.9
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 4.7e-137 491.9 340 70.3
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.0e-136 490.7 340 70.0
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.4e-136 490.3 357 69.5
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.8e-136 490.0 324 72.5
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.3e-136 489.6 341 71.0
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 3.0e-136 489.2 341 69.8
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 4.0e-136 488.8 314 74.2
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 4.0e-136 488.8 341 70.1
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.2e-135 487.3 340 69.4
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 1.5e-135 486.9 344 68.9
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 2.0e-135 486.5 323 74.9
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 2.0e-135 486.5 335 72.8
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.0e-135 486.5 338 71.6
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 4.4e-135 485.3 341 69.5
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 4.4e-135 485.3 341 69.5
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 5.7e-135 485.0 335 72.5
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 5.7e-135 485.0 335 72.5
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 5.7e-135 485.0 358 67.6
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 7.5e-135 484.6 317 75.1
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 7.5e-135 484.6 341 71.0
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 7.5e-135 484.6 338 68.9
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 3.7e-134 482.3 343 69.4
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 4.9e-134 481.9 341 69.5
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.4e-133 480.3 340 69.4
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.4e-133 480.3 339 69.0
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 1.4e-133 480.3 340 70.3
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.8e-133 479.9 303 75.6
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 3.1e-133 479.2 325 70.8
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 4.1e-133 478.8 340 66.2
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 5.4e-133 478.4 334 68.9
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.6e-132 476.9 344 67.4
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 3.5e-132 475.7 337 69.4
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 5.0e-131 471.9 316 71.2
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 5.0e-131 471.9 342 68.7
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 8.6e-131 471.1 300 77.3
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.1e-130 470.7 319 70.5
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.5e-130 470.3 316 71.2
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.9e-130 469.9 328 69.5
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 2.5e-130 469.5 328 69.5
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 2.5e-130 469.5 346 67.9
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 3.3e-130 469.2 328 69.2
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 3.3e-130 469.2 328 69.2
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 5.6e-130 468.4 328 68.9
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 9.5e-130 467.6 343 66.8
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 9.5e-130 467.6 341 66.3
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.6e-129 466.8 323 70.0
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 4.7e-129 465.3 341 66.3
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 4.7e-129 465.3 340 70.0
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 1.0e-128 464.2 314 70.1
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.8e-128 463.4 341 67.2
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 4.0e-128 462.2 314 71.0
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.2e-127 460.7 334 66.8
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 2.0e-127 459.9 341 66.6
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 2.0e-127 459.9 321 69.2
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.4e-127 459.1 339 66.7
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 3.4e-127 459.1 314 70.4
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 3.4e-127 459.1 316 69.3
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 4.4e-127 458.8 325 67.1
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 2.9e-126 456.1 341 65.7
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 3.7e-126 455.7 319 68.7
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 3.7e-126 455.7 316 69.9
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 8.3e-126 454.5 316 69.9
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 8.3e-126 454.5 316 69.9
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.8e-125 453.4 316 69.6
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.8e-125 453.4 316 69.6
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.8e-125 453.4 323 66.9
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 3.5e-124 449.1 418 57.2
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.6e-124 448.7 330 65.5
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 9.2e-117 424.5 326 66.6
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 1.6e-116 423.7 340 62.1
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 5.0e-115 418.7 340 63.2
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 2.5e-114 416.4 330 62.7
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 5.6e-114 415.2 218 95.4
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 8.1e-113 411.4 289 69.6
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.8e-112 410.2 270 72.6
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 4.0e-112 409.1 293 66.9
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 2.2e-110 403.3 266 74.8
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.4e-109 400.6 317 62.5
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 1.4e-109 400.6 290 66.2
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 5.4e-109 398.7 271 72.7
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.2e-108 397.5 519 45.5
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 6.6e-107 391.7 274 67.5
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.1e-106 391.0 280 71.1
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 9.5e-106 387.9 292 68.5
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 1.4e-101 374.0 299 61.5
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 6.6e-99 365.2 261 65.9
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 7.6e-95 351.7 173 100.0
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 2.4e-93 346.7 319 53.6
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 4.6e-92 342.4 323 53.9
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 6.0e-92 342.0 315 52.1
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.6e-90 335.5 316 53.8
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.3e-89 334.3 332 49.7
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 1.4e-88 330.9 316 54.1
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 8.4e-86 321.6 228 69.7
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 9.9e-79 298.1 219 60.3
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 2.2e-78 297.0 219 66.2
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.1e-77 294.7 269 54.3
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 8.4e-70 268.5 219 61.2
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 9.3e-69 265.0 181 70.7
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 2.1e-68 263.8 197 68.0
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 7.6e-63 245.4 187 66.3
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.8e-62 243.0 245 51.8
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 6.3e-57 225.7 224 54.0
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 2.7e-44 183.7 117 68.4
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.4e-40 170.6 149 62.4
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.8e-38 163.3 150 53.3
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 3.2e-37 160.2 337 32.9
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 5.2e-35 152.9 93 75.3
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 3.1e-32 143.7 276 32.2
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 7.0e-32 142.5 76 88.2
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 1.6e-28 131.3 298 32.9
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 1.1e-21 108.6 97 48.5
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 1.3e-17 95.1 103 47.6
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 3.5e-15 87.0 74 62.2
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 7.3e-13 79.3 184 27.7
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 6.1e-12 76.3 46 76.1


User provided reference genes

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