Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 3.4e-275 951.0 482 100.0
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 5.9e-118 428.7 461 53.1
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 1.2e-115 421.0 453 53.2
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 6.1e-115 418.7 446 55.6
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 3.0e-114 416.4 454 52.0
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 6.7e-114 415.2 453 52.8
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 2.0e-113 413.7 455 52.5
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 7.2e-108 395.2 482 49.2
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 6.1e-107 392.1 446 50.0
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 6.5e-101 372.1 453 49.4
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 1.2e-99 367.9 468 50.2
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 1.2e-97 361.3 453 50.1
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 1.8e-95 354.0 472 48.1
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 3.1e-95 353.2 451 46.8
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 9.1e-95 351.7 473 48.0
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 2.7e-94 350.1 538 44.2
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 1.3e-93 347.8 484 45.7
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 3.2e-92 343.2 463 46.2
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 2.1e-91 340.5 479 45.1
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 1.7e-88 330.9 436 46.1
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.6e-86 324.3 471 44.4
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 1.3e-85 321.2 472 44.7
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.9e-85 320.1 444 44.1
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 2.5e-84 317.0 467 44.1
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 5.5e-84 315.8 471 42.7
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 2.8e-83 313.5 461 42.7
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 3.6e-83 313.2 469 43.5
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 3.6e-83 313.2 471 41.2
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 3.6e-83 313.2 493 42.0
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 6.8e-82 308.9 471 43.3
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 1.2e-81 308.1 445 44.0
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 1.2e-81 308.1 446 44.2
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 2.0e-81 307.4 461 44.9
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 1.4e-79 301.2 455 43.1
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 3.2e-79 300.1 440 42.3
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 6.6e-77 292.4 437 42.1
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.5e-76 290.4 440 41.8
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 5.6e-76 289.3 445 40.4
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.2e-75 288.1 423 42.6
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 1.2e-75 288.1 443 42.7
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.6e-75 287.7 443 40.0
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 2.8e-75 287.0 432 41.4
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 8.0e-75 285.4 436 42.0
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 1.2e-73 281.6 446 39.5
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 4.4e-73 279.6 475 39.2
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 4.9e-72 276.2 449 39.2
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 8.3e-72 275.4 436 40.6
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 2.4e-71 273.9 442 39.6
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 7.0e-71 272.3 435 42.1
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 9.2e-71 271.9 442 40.0
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 1.6e-70 271.2 436 40.8
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 3.5e-70 270.0 446 37.9
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 4.6e-70 269.6 444 40.1
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 4.6e-70 269.6 441 39.9
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 6.0e-70 269.2 442 39.4
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 7.8e-70 268.9 476 38.7
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 7.8e-70 268.9 473 39.1
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 1.7e-69 267.7 440 40.5
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 3.0e-69 266.9 437 40.3
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 5.0e-69 266.2 440 38.9
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 5.0e-69 266.2 441 39.7
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 5.0e-69 266.2 452 39.8
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 6.6e-69 265.8 447 40.0
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 3.3e-68 263.5 447 39.4
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.6e-67 260.0 444 39.9
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 5.2e-66 256.1 559 34.9
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 8.9e-66 255.4 456 39.3
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 8.9e-66 255.4 453 39.3
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 1.2e-65 255.0 440 38.0
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.6e-65 253.8 403 40.4
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.4e-65 253.4 432 39.1
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 1.3e-64 251.5 454 37.9
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 1.7e-64 251.1 451 37.9
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.7e-64 251.1 454 36.8
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 2.2e-64 250.8 432 38.4
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 6.4e-64 249.2 490 35.1
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 8.3e-64 248.8 466 37.3
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 2.4e-63 247.3 432 38.7
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 9.2e-63 245.4 438 38.4
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 9.2e-63 245.4 438 38.4
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 3.5e-62 243.4 432 37.7
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 4.6e-62 243.0 434 38.2
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.3e-61 241.5 433 37.9
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 1.5e-60 238.0 439 38.3
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 1.9e-60 237.7 460 36.7
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 1.9e-60 237.7 439 38.0
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 9.5e-60 235.3 438 34.7
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.8e-58 229.2 372 39.5
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.8e-58 229.2 428 37.4
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 6.8e-58 229.2 508 34.1
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.5e-57 228.0 434 36.6
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 2.0e-57 227.6 434 36.6
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 1.3e-56 224.9 444 36.0
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 2.9e-56 223.8 194 58.2
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.2e-55 220.3 381 37.0
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 9.6e-52 208.8 341 39.3
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 5.2e-50 203.0 209 48.8
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 8.9e-50 202.2 198 54.0
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 1.5e-49 201.4 435 34.0
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 5.4e-47 193.0 189 57.1
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 1.6e-46 191.4 196 51.5
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 4.0e-42 176.8 152 56.6
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 2.0e-41 174.5 266 39.5
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 9.6e-36 155.6 383 30.5
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 5.3e-34 149.8 123 61.0
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 2.7e-30 137.5 151 51.0
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 3.0e-29 134.0 152 50.7
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 5.6e-28 129.8 148 48.6
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 3.1e-26 124.0 83 67.5
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 3.1e-26 124.0 350 30.6
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 3.2e-23 114.0 84 67.9
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 6.0e-22 109.8 117 51.3
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 6.7e-21 106.3 138 42.8
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 4.3e-20 103.6 92 58.7
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 9.6e-20 102.4 165 41.8
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 1.6e-19 101.7 153 43.1
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.2e-17 95.5 78 56.4
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 3.4e-17 94.0 85 51.8
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 7.2e-15 86.3 157 31.2
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 2.1e-14 84.7 55 69.1
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.6e-11 75.1 64 59.4


User provided reference genes

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