Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 0.0e+00 1727.2 866 100.0
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 3.6e-299 1031.6 906 60.7
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 1.1e-295 1020.0 870 59.8
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 8.5e-293 1010.4 912 58.6
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 1.1e-292 1010.0 870 59.5
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 6.1e-291 1004.2 885 59.2
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 3.1e-287 991.9 888 58.6
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.6e-286 989.6 888 58.3
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 2.7e-283 978.8 888 58.0
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 6.7e-282 974.2 901 58.9
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 4.7e-275 951.4 900 56.9
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 8.8e-274 947.2 889 56.6
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 2.0e-273 946.0 899 56.7
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 2.4e-271 939.1 798 60.7
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 1.6e-270 936.4 899 56.5
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 6.5e-269 931.0 924 55.5
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 4.5e-262 908.3 917 52.9
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 6.8e-258 894.4 867 55.8
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 3.7e-256 888.6 924 53.1
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.1e-255 887.1 924 53.0
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 7.3e-252 874.4 883 53.3
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 6.2e-251 871.3 1114 45.8
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 1.0e-245 854.0 1108 45.8
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 1.2e-243 847.0 1112 45.1
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 6.8e-242 841.3 873 52.3
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 2.2e-240 836.3 879 52.1
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 1.1e-239 833.9 916 49.8
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 3.2e-239 832.4 880 50.8
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 4.1e-239 832.0 860 54.2
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 4.6e-238 828.6 1123 44.7
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 1.7e-237 826.6 880 50.5
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 2.3e-237 826.2 879 51.4
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 3.9e-237 825.5 873 50.3
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 1.6e-235 820.1 886 50.9
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 5.2e-234 815.1 875 50.6
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 6.8e-234 814.7 880 50.3
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 1.5e-233 813.5 882 50.3
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 2.6e-233 812.8 912 49.3
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 6.0e-230 801.6 879 50.6
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 1.0e-229 800.8 909 48.7
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 1.3e-229 800.4 886 49.5
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 6.6e-229 798.1 901 48.4
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 1.5e-228 797.0 903 49.1
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 1.9e-228 796.6 890 50.6
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 2.1e-227 793.1 890 51.9
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 4.7e-227 792.0 903 48.1
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 6.2e-227 791.6 889 48.9
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 6.2e-227 791.6 870 50.0
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 1.2e-225 787.3 901 48.4
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 2.6e-225 786.2 901 48.3
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 4.4e-225 785.4 902 48.4
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 5.8e-225 785.0 887 48.9
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 9.9e-225 784.3 901 48.2
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 8.4e-224 781.2 902 48.2
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 1.9e-223 780.0 927 46.9
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.2e-222 777.3 891 48.1
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 1.5e-220 770.4 884 50.8
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 8.1e-219 764.6 901 47.1
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 1.1e-218 764.2 1098 41.8
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 1.8e-218 763.5 890 47.2
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 3.1e-218 762.7 897 47.0
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 2.0e-217 760.0 886 46.6
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 1.3e-216 757.3 897 46.6
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 2.1e-214 750.0 638 60.2
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.4e-210 736.5 886 46.3
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 7.6e-209 731.5 886 45.8
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 9.9e-209 731.1 1098 40.1
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 1.5e-204 717.2 869 47.1
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 6.5e-200 701.8 892 46.3
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 5.5e-199 698.7 879 46.2
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 1.6e-198 697.2 1064 42.2
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.6e-198 695.7 884 44.5
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.8e-197 693.7 897 45.5
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 3.0e-197 693.0 788 47.8
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 5.7e-196 688.7 872 46.7
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 3.4e-193 679.5 829 47.2
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 1.7e-192 677.2 1082 39.6
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.2e-191 672.5 839 45.6
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.3e-188 662.9 647 54.7
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 4.3e-188 662.5 788 46.8
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.7e-184 650.6 841 44.6
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 2.5e-183 646.7 919 43.4
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 1.8e-181 640.6 851 44.8
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 3.1e-178 629.8 1107 37.0
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 2.6e-177 626.7 1059 38.2
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.6e-174 617.5 782 44.9
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 2.0e-172 610.5 975 38.1
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 6.1e-166 589.0 701 49.5
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 4.0e-165 586.3 1021 36.9
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 3.1e-162 576.6 755 44.0
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 5.5e-159 565.8 692 47.1
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 2.3e-157 560.5 958 36.7
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 2.8e-150 537.0 485 58.4
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.0e-145 520.8 507 53.3
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 1.5e-140 504.6 544 50.0
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 9.8e-140 501.9 592 46.5
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 2.4e-138 497.3 879 36.6
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 4.6e-129 466.5 610 44.3
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 3.6e-126 456.8 952 33.0
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 1.4e-125 454.9 956 31.5
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 4.9e-123 446.4 492 49.4
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 5.4e-122 443.0 542 47.6
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 1.5e-111 408.3 583 40.5
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 1.9e-111 407.9 941 32.7
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 3.2e-106 390.6 790 33.9
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 3.5e-105 387.1 938 31.0
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 9.3e-98 362.5 1191 26.6
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 4.3e-95 353.6 382 49.5
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 3.9e-88 330.5 474 42.2
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 9.3e-82 309.3 363 47.1
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 2.8e-78 297.7 679 33.6
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 5.3e-77 293.5 283 56.2
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 2.6e-68 264.6 930 25.5
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 1.0e-67 262.7 369 41.7
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 2.3e-64 251.5 302 49.0
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 1.1e-63 249.2 362 41.2
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 9.7e-63 246.1 632 30.1
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 2.0e-60 238.4 329 44.7
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 1.4e-56 225.7 160 67.5
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.3e-56 224.9 278 45.3
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.3e-56 224.9 202 58.4
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 9.4e-50 203.0 266 43.2
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 2.7e-49 201.4 196 52.0
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 3.6e-49 201.1 190 55.3
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 6.3e-46 190.3 196 51.0
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 4.0e-40 171.0 810 25.2
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 1.3e-35 156.0 339 32.4
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 9.8e-31 139.8 109 62.4
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 8.6e-27 126.7 225 35.1
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 1.1e-26 126.3 80 68.8
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 3.4e-23 114.8 122 52.5
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 3.5e-20 104.8 98 49.0
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 5.6e-18 97.4 85 58.8
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 9.2e-13 80.1 144 38.9
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 4.7e-09 67.8 168 31.5
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 1.3e-06 59.7 107 35.5


User provided reference genes

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