Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1589 Cannabis sativa HOM05D004255 ORTHO05D004815 4.8e-40 169.1 81 100.0
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 1.3e-37 161.0 80 97.5
CANSAT11G1641 Cannabis sativa HOM05D004255 ORTHO05D004815 1.7e-29 134.0 65 100.0
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 2.7e-19 100.1 80 56.2
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 4.7e-19 99.4 80 60.0
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 7.9e-19 98.6 80 56.2
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 7.9e-19 98.6 80 61.2
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 1.0e-18 98.2 80 60.0
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.0e-18 98.2 80 60.0
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 2.3e-18 97.1 80 60.0
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 5.1e-18 95.9 80 55.0
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 8.8e-18 95.1 79 51.9
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 2.6e-17 93.6 81 54.3
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 3.7e-16 89.7 81 55.6
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 8.2e-16 88.6 80 50.0
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 1.8e-15 87.4 80 51.2
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 1.8e-15 87.4 80 52.5
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 5.3e-15 85.9 80 51.2
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 1.2e-14 84.7 81 55.6
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 4.5e-14 82.8 78 52.6
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 7.7e-14 82.0 78 51.3
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.9e-13 80.1 81 48.1
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 2.9e-13 80.1 81 48.1
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 3.8e-13 79.7 80 47.5
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 6.5e-13 79.0 81 46.9
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 2.5e-12 77.0 81 44.4
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 4.2e-12 76.3 80 50.0
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 5.5e-12 75.9 80 43.8
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 9.4e-12 75.1 78 42.3
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 1.6e-11 74.3 81 43.2
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 2.7e-11 73.6 80 45.0
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 3.6e-11 73.2 77 48.1
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 4.7e-11 72.8 82 48.8
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 8.0e-11 72.0 80 43.8
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 8.0e-11 72.0 53 58.5
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 1.0e-10 71.6 83 47.0
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 1.4e-10 71.2 80 38.8
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 1.8e-10 70.9 77 48.1
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 1.8e-10 70.9 87 42.5
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 3.0e-10 70.1 81 42.0
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 5.2e-10 69.3 80 41.2
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 5.2e-10 69.3 80 41.2
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 6.7e-10 68.9 82 45.1
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 8.8e-10 68.6 82 45.1
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 8.8e-10 68.6 82 43.9
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 8.8e-10 68.6 68 48.5
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 2.0e-09 67.4 77 44.2
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 2.0e-09 67.4 55 58.2
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 3.3e-09 66.6 67 49.3
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 3.3e-09 66.6 82 40.2
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 4.4e-09 66.2 80 38.8
Prupe.6G234000 Prunus persica HOM05D004255 ORTHO05D004815 4.4e-09 66.2 59 50.8
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 5.7e-09 65.9 75 38.7
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 5.7e-09 65.9 65 47.7
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 9.7e-09 65.1 75 42.7
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 9.7e-09 65.1 80 46.2
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.3e-08 64.7 80 40.0
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.7e-08 64.3 80 40.0
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 1.7e-08 64.3 77 33.8
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 2.2e-08 63.9 80 38.8
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 2.2e-08 63.9 78 38.5
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 3.7e-08 63.2 78 43.6
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 3.7e-08 63.2 78 43.6
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 8.2e-08 62.0 81 38.3
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.1e-07 61.6 55 54.5
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 1.8e-07 60.8 82 42.7
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 2.4e-07 60.5 84 39.3
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 2.4e-07 60.5 49 51.0
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 2.4e-07 60.5 80 35.0
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 5.3e-07 59.3 55 52.7
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 5.3e-07 59.3 80 33.8
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 7.0e-07 58.9 80 36.2
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 1.2e-06 58.2 80 36.2
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 1.2e-06 58.2 73 39.7
BcaB01g03971 Brassica carinata HOM05D004255 ORTHO05D004815 2.0e-06 57.4 55 49.1
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 2.7e-06 57.0 55 49.1
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 2.7e-06 57.0 80 33.8
TWI74G0375 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 3.5e-06 56.6 52 50.0
C03p21260 Brassica napus HOM05D004255 ORTHO05D004815 4.5e-06 56.2 55 47.3
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.5e-06 56.2 33 78.8
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 5.9e-06 55.8 55 47.3
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 5.9e-06 55.8 55 47.3
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 5.9e-06 55.8 55 47.3
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 5.9e-06 55.8 73 39.7
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 5.9e-06 55.8 80 33.8
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 7.7e-06 55.5 75 41.3


User provided reference genes

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