Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 7.8e-43 176.8 94 100.0
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 2.0e-22 109.0 92 70.7
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 1.7e-21 105.9 90 64.4
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 6.5e-21 104.0 92 68.5
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 9.3e-20 100.1 92 64.1
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 1.2e-19 99.8 100 59.0
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 1.6e-19 99.4 100 60.0
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 1.6e-19 99.4 102 61.8
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 1.6e-19 99.4 97 59.8
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 3.5e-19 98.2 94 62.8
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 3.5e-19 98.2 93 64.5
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 3.5e-19 98.2 91 64.8
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 6.0e-19 97.4 101 61.4
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 3.0e-18 95.1 101 55.4
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 5.1e-18 94.4 92 62.0
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 6.7e-18 94.0 101 57.4
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 8.7e-18 93.6 101 57.4
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 8.7e-18 93.6 99 60.6
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 8.7e-18 93.6 92 60.9
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 8.7e-18 93.6 101 55.4
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 1.1e-17 93.2 92 60.9
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 1.1e-17 93.2 97 56.7
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.1e-17 93.2 92 63.0
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 1.1e-17 93.2 105 64.8
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 1.5e-17 92.8 103 58.3
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 1.5e-17 92.8 101 60.4
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.5e-17 92.8 92 63.0
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.5e-17 92.8 92 63.0
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.9e-17 92.4 93 58.1
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 2.5e-17 92.0 98 58.2
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 2.5e-17 92.0 102 60.8
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 3.3e-17 91.7 103 55.3
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 3.3e-17 91.7 99 61.6
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 3.3e-17 91.7 97 54.6
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 3.3e-17 91.7 104 57.7
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 4.3e-17 91.3 92 62.0
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 4.3e-17 91.3 98 59.2
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 5.7e-17 90.9 103 58.3
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.3e-16 89.7 93 61.3
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 1.6e-16 89.4 104 56.7
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 1.6e-16 89.4 101 56.4
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 2.2e-16 89.0 103 57.3
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 2.2e-16 89.0 92 58.7
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 2.8e-16 88.6 92 58.7
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 2.8e-16 88.6 98 61.2
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 2.8e-16 88.6 103 55.3
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 3.7e-16 88.2 102 59.8
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 6.3e-16 87.4 99 57.6
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 6.3e-16 87.4 99 57.6
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 6.3e-16 87.4 100 60.0
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 8.2e-16 87.0 98 58.2
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 8.2e-16 87.0 88 59.1
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 8.2e-16 87.0 93 63.4
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 8.2e-16 87.0 87 60.9
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 8.2e-16 87.0 92 60.9
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 8.2e-16 87.0 103 52.4
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 1.1e-15 86.7 102 54.9
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 1.1e-15 86.7 104 54.8
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 1.1e-15 86.7 104 54.8
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.1e-15 86.7 100 54.0
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 1.4e-15 86.3 104 57.7
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 1.4e-15 86.3 104 57.7
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 1.8e-15 85.9 101 56.4
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 1.8e-15 85.9 88 60.2
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 2.4e-15 85.5 103 55.3
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 3.1e-15 85.1 91 56.0
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 3.1e-15 85.1 106 52.8
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 6.9e-15 84.0 100 56.0
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 6.9e-15 84.0 90 54.4
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.5e-14 82.8 91 59.3
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 1.5e-14 82.8 89 61.8
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.5e-14 82.8 102 52.9
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 2.0e-14 82.4 96 57.3
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 2.6e-14 82.0 96 55.2
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 2.6e-14 82.0 90 63.3
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 4.5e-14 81.3 95 52.6
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 7.7e-14 80.5 93 57.0
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 7.7e-14 80.5 97 51.5
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.0e-13 80.1 100 52.0
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 1.0e-13 80.1 99 48.5
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.0e-13 80.1 100 55.0
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.0e-13 80.1 100 55.0
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 2.2e-13 79.0 90 53.3
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 2.9e-13 78.6 90 54.4
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 2.9e-13 78.6 99 51.5
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 3.8e-13 78.2 88 52.3
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 3.8e-13 78.2 90 55.6
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 5.0e-13 77.8 90 51.1
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 5.0e-13 77.8 100 56.0
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 6.5e-13 77.4 87 55.2
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 1.1e-12 76.6 88 53.4
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 1.9e-12 75.9 97 48.5
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 2.5e-12 75.5 94 54.3
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 2.5e-12 75.5 89 55.1
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 3.2e-12 75.1 91 56.0
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 3.2e-12 75.1 96 51.0
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 7.2e-12 73.9 98 51.0
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.2e-11 73.2 99 49.5
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 1.6e-11 72.8 88 54.5
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 2.1e-11 72.4 81 50.6
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 2.7e-11 72.0 87 49.4
arahy.Tifrunner.gnm1.ann1.QP3VPD Arachis hypogaea HOM05D006762 ORTHO05D003505 7.9e-11 70.5 88 55.7
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 1.0e-10 70.1 92 52.2
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.0e-10 70.1 82 51.2
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.0e-10 70.1 90 51.1
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.0e-10 70.1 90 51.1
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 2.3e-10 68.9 100 51.0
arahy.Tifrunner.gnm1.ann1.D6ADVN Arachis hypogaea HOM05D006762 ORTHO05D003505 3.0e-10 68.6 88 53.4
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.0e-10 68.6 81 51.9
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 3.0e-10 68.6 81 51.9
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.5e-09 66.2 90 55.6
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 1.5e-09 66.2 81 50.6
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 1.5e-09 66.2 81 50.6
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 2.5e-09 65.5 90 46.7
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 7.4e-09 63.9 90 51.1
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 9.7e-09 63.5 81 49.4
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 1.3e-08 63.2 90 46.7
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.3e-08 63.2 82 48.8
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 1.7e-08 62.8 97 45.4
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 2.8e-08 62.0 90 45.6
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 2.8e-08 62.0 90 45.6
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 6.3e-08 60.8 93 47.3
Glyma.17G210100 Glycine max HOM05D006762 ORTHO05D003505 1.4e-07 59.7 90 47.8
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 1.4e-07 59.7 83 47.0
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 1.4e-07 59.7 83 47.0
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.4e-07 59.7 59 52.5
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 2.4e-07 58.9 82 45.1
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 3.1e-07 58.5 104 43.3
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 3.1e-07 58.5 93 46.2
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 3.1e-07 58.5 88 46.6
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 4.1e-07 58.2 82 46.3
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 4.1e-07 58.2 88 45.5
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 5.3e-07 57.8 88 43.2
Zm00001eb249550 Zea mays HOM05D049586 ORTHO05D003505 5.3e-07 57.8 97 50.5
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 6.9e-07 57.4 84 50.0
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 6.9e-07 57.4 95 46.3
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 6.9e-07 57.4 88 47.7
HPP92_025465 Vanilla planifolia HOM05D006762 ORTHO05D003505 6.9e-07 57.4 97 49.5
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 9.1e-07 57.0 81 46.9
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 9.1e-07 57.0 82 46.3
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 9.1e-07 57.0 87 48.3
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 9.1e-07 57.0 89 46.1
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 1.5e-06 56.2 82 48.8
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 1.5e-06 56.2 82 46.3
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.5e-06 56.2 84 44.0
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 1.5e-06 56.2 87 47.1
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 2.0e-06 55.8 81 44.4
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 2.0e-06 55.8 89 44.9
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 2.0e-06 55.8 89 47.2
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 2.6e-06 55.5 84 44.0
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 3.4e-06 55.1 95 45.3
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 3.4e-06 55.1 95 45.3
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 3.4e-06 55.1 95 45.3
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 3.4e-06 55.1 87 47.1
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 4.5e-06 54.7 95 45.3
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 4.5e-06 54.7 95 45.3
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 4.5e-06 54.7 90 45.6
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 4.5e-06 54.7 88 44.3
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 5.9e-06 54.3 36 72.2
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.9e-06 54.3 87 46.0
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 5.9e-06 54.3 104 40.4
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 5.9e-06 54.3 90 42.2
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 7.7e-06 53.9 84 42.9
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 7.7e-06 53.9 91 45.1
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 7.7e-06 53.9 89 46.1
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 7.7e-06 53.9 89 46.1


User provided reference genes

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