Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1526 Cannabis sativa HOM05D012549 ORTHO05D013546 1.1e-261 906.0 435 100.0
CANSAT21G0540 Cannabis sativa HOM05D012549 ORTHO05D001155 1.2e-56 224.9 412 32.5
CANSAT78G0001 Cannabis sativa HOM05D012549 ORTHO05D013546 1.8e-33 147.9 457 27.8
SGA_v2.0_scaffold94G28510 Striga asiatica HOM05D012549 ORTHO05D013546 5.3e-33 146.4 437 30.2
SGA_v2.0_scaffold80G25772 Striga asiatica HOM05D012549 ORTHO05D013546 1.4e-30 138.3 430 29.1
SGA_v2.0_scaffold80G25794 Striga asiatica HOM05D012549 ORTHO05D013546 5.4e-30 136.3 433 28.2
SGA_v2.0_scaffold199G41212 Striga asiatica HOM05D012549 ORTHO05D013546 1.2e-29 135.2 436 28.9
SGA_v2.0_scaffold98G29332 Striga asiatica HOM05D012549 ORTHO05D013546 2.7e-29 134.0 428 27.6
CANSAT78G1812 Cannabis sativa HOM05D012549 ORTHO05D013546 1.3e-28 131.7 464 28.9
SGA_v2.0_scaffold98G29336 Striga asiatica HOM05D012549 ORTHO05D013546 1.5e-27 128.3 430 27.4
SGA_v2.0_scaffold80G25855 Striga asiatica HOM05D012549 ORTHO05D013546 1.9e-27 127.9 433 28.4
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 5.3e-25 119.8 461 26.9
QL01p006048 Quercus lobata HOM05D001729 ORTHO05D001155 6.9e-25 119.4 455 26.8
AUR62006002 Chenopodium quinoa HOM05D001729 ORTHO05D001155 1.9e-22 111.3 439 26.9
CANSAT80G0415 Cannabis sativa HOM05D001729 ORTHO05D001155 4.2e-22 110.2 462 26.0
Thecc.03G222100 Theobroma cacao HOM05D001729 ORTHO05D001155 1.2e-21 108.6 437 26.8
QL07p036320 Quercus lobata HOM05D001729 ORTHO05D001155 2.1e-21 107.8 483 26.7
SGA_v2.0_scaffold80G25779 Striga asiatica HOM05D012549 ORTHO05D013546 4.6e-21 106.7 309 30.4
Sc19g0001870 Simmondsia chinensis HOM05D001729 ORTHO05D001155 7.4e-19 99.4 431 26.2
SGA_v2.0_scaffold386G50502 Striga asiatica HOM05D023019 ORTHO05D013546 7.4e-19 99.4 449 26.3
SGA_v2.0_scaffold386G50500 Striga asiatica HOM05D023019 ORTHO05D013546 1.3e-18 98.6 484 26.2
QL08p043319 Quercus lobata HOM05D001729 ORTHO05D001155 2.8e-18 97.4 447 27.3
QL07p019801 Quercus lobata HOM05D001729 ORTHO05D001155 3.7e-18 97.1 471 28.7
Rhsim08G0237800 Rhododendron simsii HOM05D001729 ORTHO05D001155 3.7e-18 97.1 432 26.6
QL05p052800 Quercus lobata HOM05D001729 ORTHO05D001155 8.1e-18 95.9 446 24.9
PGSC0003DMG400005639 Solanum tuberosum HOM05D001729 ORTHO05D001155 1.1e-17 95.5 426 24.4
Atru.chr9.1050 Acer truncatum HOM05D006807 ORTHO05D008528 1.4e-17 95.1 421 25.4
CANSAT54G0181 Cannabis sativa HOM05D023019 ORTHO05D013546 3.1e-17 94.0 415 27.5
Rhsim08G0238800 Rhododendron simsii HOM05D001729 ORTHO05D001155 4.0e-17 93.6 438 26.5
Potri.011G004800 Populus trichocarpa HOM05D001729 ORTHO05D001155 2.6e-16 90.9 426 25.4
Prupe.3G059600 Prunus persica HOM05D001729 ORTHO05D001155 5.8e-16 89.7 429 23.8
Dinv35017 Davidia involucrata HOM05D008898 ORTHO05D001155 1.0e-15 89.0 407 26.0
SGA_v2.0_scaffold98G29327 Striga asiatica HOM05D012549 ORTHO05D013546 1.3e-15 88.6 327 26.9
MD09G1201600 Malus domestica HOM05D001729 ORTHO05D001155 3.8e-15 87.0 444 25.7
MD05G1244200 Malus domestica HOM05D001729 ORTHO05D001155 4.9e-15 86.7 456 23.7
Sabra11G0003700 Salix brachista HOM05D001729 ORTHO05D001155 4.9e-15 86.7 420 24.8
QL02p054283 Quercus lobata HOM05D001729 ORTHO05D001155 1.1e-14 85.5 437 22.9
FAN27G2714 Fragaria x ananassa HOM05D001115 ORTHO05D001023 3.2e-14 84.0 439 22.6
PGSC0003DMG400005638 Solanum tuberosum HOM05D001729 ORTHO05D001155 3.2e-14 84.0 426 23.9
FvH4_6g01541 Fragaria vesca HOM05D001729 ORTHO05D001155 4.2e-14 83.6 438 21.9
Lsat_1_v5_gn_6_92061 Lactuca sativa HOM05D001729 ORTHO05D001155 9.3e-14 82.4 426 24.9
RcHm_v2.0_Chr3g0450211 Rosa chinensis HOM05D001729 ORTHO05D001155 9.3e-14 82.4 477 23.9
FAN14G0866 Fragaria x ananassa HOM05D001729 ORTHO05D001155 3.5e-13 80.5 464 25.9
FAN14G2874 Fragaria x ananassa HOM05D001729 ORTHO05D001155 6.0e-13 79.7 438 22.4
Lsat_1_v5_gn_5_30901 Lactuca sativa HOM05D001729 ORTHO05D001155 6.0e-13 79.7 459 25.1
FAN15G1054 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.0e-12 79.0 437 23.1
Potri.011G000700 Populus trichocarpa HOM05D001729 ORTHO05D001155 1.0e-12 79.0 451 24.8
RcHm_v2.0_Chr6g0292091 Rosa chinensis HOM05D001729 ORTHO05D001155 1.3e-12 78.6 416 24.0
Ah.07g204710 Amaranthus hybridus HOM05D001729 ORTHO05D001155 2.3e-12 77.8 437 26.5
Lsat_1_v5_gn_5_31100 Lactuca sativa HOM05D001729 ORTHO05D001155 3.9e-12 77.0 453 25.2
Potri.009G132400 Populus trichocarpa HOM05D001729 ORTHO05D001155 5.1e-12 76.6 432 24.1
RcHm_v2.0_Chr3g0449911 Rosa chinensis HOM05D001729 ORTHO05D001155 5.1e-12 76.6 483 23.6
Sc19g0000590 Simmondsia chinensis HOM05D001729 ORTHO05D001155 5.1e-12 76.6 457 23.9
FAN14G5781 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.1e-11 75.5 436 25.2
Sabra09G0102700 Salix brachista HOM05D001729 ORTHO05D001155 1.5e-11 75.1 441 24.0
FvH4_2g19920 Fragaria vesca HOM05D001729 ORTHO05D001155 2.5e-11 74.3 424 22.4
FAN24G2147 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.5e-11 74.3 424 22.4
Lsat_1_v5_gn_5_38981 Lactuca sativa HOM05D008898 ORTHO05D001155 3.3e-11 73.9 306 26.5
Prupe.3G059500 Prunus persica HOM05D001729 ORTHO05D001155 5.7e-11 73.2 444 23.6
Psat4g020960 Pisum sativum HOM05D001729 ORTHO05D001155 1.3e-10 72.0 424 23.1
FAN14G1187 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.1e-10 71.2 387 22.5
Lsat_1_v5_gn_5_38300 Lactuca sativa HOM05D008898 ORTHO05D001155 4.8e-10 70.1 296 24.7
FAN02G0048 Fragaria x ananassa HOM05D001729 ORTHO05D001155 1.4e-09 68.6 467 24.0
Medtr4g007240 Medicago truncatula HOM05D012242 ORTHO05D001155 1.4e-09 68.6 376 26.3
AL5G16370 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.8e-09 68.2 435 22.5
COL.COLO4_30694 Corchorus olitorius HOM05D001729 ORTHO05D001155 1.8e-09 68.2 218 27.1
COL.COLO4_34020 Corchorus olitorius HOM05D001729 ORTHO05D001155 3.1e-09 67.4 437 25.2
Lsat_1_v5_gn_5_38761 Lactuca sativa HOM05D008898 ORTHO05D001155 6.9e-09 66.2 312 25.3
AUR62027174 Chenopodium quinoa HOM05D001729 ORTHO05D001155 9.0e-09 65.9 432 22.9
RcHm_v2.0_Chr2g0123691 Rosa chinensis HOM05D001729 ORTHO05D001155 9.0e-09 65.9 462 22.9
FvH4_3g44471 Fragaria vesca HOM05D001729 ORTHO05D001155 1.5e-08 65.1 464 23.7
FvH4_6g46241 Fragaria vesca HOM05D001729 ORTHO05D001155 2.0e-08 64.7 243 24.3
RcHm_v2.0_Chr3g0457271 Rosa chinensis HOM05D001729 ORTHO05D001155 2.0e-08 64.7 217 26.7
AL1G27780 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.5e-08 63.5 385 25.5
MD03G1256400 Malus domestica HOM05D001729 ORTHO05D001155 4.5e-08 63.5 271 26.9
RcHm_v2.0_Chr5g0018111 Rosa chinensis HOM05D001729 ORTHO05D001155 5.9e-08 63.2 475 21.9
RcHm_v2.0_Chr5g0021011 Rosa chinensis HOM05D001729 ORTHO05D001155 7.6e-08 62.8 447 23.3
Prupe.3G265100 Prunus persica HOM05D001729 ORTHO05D001155 2.2e-07 61.2 440 23.2
QL05p008212 Quercus lobata HOM05D001729 ORTHO05D001155 2.2e-07 61.2 385 23.4
AUR62015641 Chenopodium quinoa HOM05D001729 ORTHO05D001155 2.9e-07 60.8 407 22.9
FvH4_3g35490 Fragaria vesca HOM05D001729 ORTHO05D001155 3.8e-07 60.5 289 25.6
FvH4_6g46240 Fragaria vesca HOM05D001729 ORTHO05D001155 3.8e-07 60.5 468 23.5
FAN11G0139 Fragaria x ananassa HOM05D001729 ORTHO05D001155 3.8e-07 60.5 276 25.7
PSO761G0401 Papaver somniferum HOM05D008326 ORTHO05D001155 5.0e-07 60.1 465 23.7
BcaB08g36564 Brassica carinata HOM05D002743 ORTHO05D002895 8.4e-07 59.3 399 26.1
Duzib147G0011 Durio zibethinus HOM05D001729 ORTHO05D001155 8.4e-07 59.3 330 22.7
FAN14G2361 Fragaria x ananassa HOM05D001729 ORTHO05D001155 8.4e-07 59.3 413 24.5
PGSC0003DMG400002644 Solanum tuberosum HOM05D008898 ORTHO05D001155 8.4e-07 59.3 201 28.9
FvH4_3g30171 Fragaria vesca HOM05D001729 ORTHO05D001155 1.1e-06 58.9 277 26.7
FvH4_3g44510 Fragaria vesca HOM05D001729 ORTHO05D001155 1.1e-06 58.9 432 22.5
QL08p014547 Quercus lobata HOM05D001729 ORTHO05D001155 1.9e-06 58.2 226 25.7
FAN11G2672 Fragaria x ananassa HOM05D001729 ORTHO05D001155 2.5e-06 57.8 276 26.8
SGA_v2.0_scaffold10G05389 Striga asiatica HOM05D000007 ORTHO05D000521 2.5e-06 57.8 350 24.6
AL1G57560 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.2e-06 57.4 208 28.4
C06p04770 Brassica napus HOM05D002743 ORTHO05D002895 3.2e-06 57.4 373 23.9
ECA246G1437 Erigeron canadensis HOM05D008898 ORTHO05D001155 4.2e-06 57.0 289 23.9
FAN16G2506 Fragaria x ananassa HOM05D001729 ORTHO05D001155 4.2e-06 57.0 436 22.9
BcaB07g33448 Brassica carinata HOM05D002743 ORTHO05D002895 5.5e-06 56.6 381 25.5
Lj3g0002390 Lotus japonicus HOM05D012242 ORTHO05D001155 5.5e-06 56.6 421 24.5
MD14G1187900 Malus domestica HOM05D001729 ORTHO05D001155 5.5e-06 56.6 453 23.0
THA.LOC104805970 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 5.5e-06 56.6 402 25.9
BcaC08g43177 Brassica carinata HOM05D002743 ORTHO05D002895 7.2e-06 56.2 373 23.3


User provided reference genes

Program Settings