Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 3.9e-46 188.0 108 100.0
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.8e-35 152.5 108 84.3
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 3.8e-25 118.2 107 67.3
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.2e-23 113.2 101 63.4
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.6e-23 111.7 101 63.4
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.6e-23 111.7 101 63.4
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 4.7e-23 111.3 104 65.4
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 2.0e-21 105.9 86 66.3
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 5.7e-21 104.4 89 67.4
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 1.3e-20 103.2 101 60.4
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.7e-20 102.8 79 74.7
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 1.7e-20 102.8 87 69.0
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 2.2e-20 102.4 87 70.1
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 2.8e-20 102.1 88 70.5
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 3.7e-20 101.7 99 62.6
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 3.7e-20 101.7 86 66.3
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 6.3e-20 100.9 86 65.1
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 6.3e-20 100.9 86 65.1
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 8.2e-20 100.5 108 57.4
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 8.2e-20 100.5 86 65.1
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 8.2e-20 100.5 86 66.3
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 1.1e-19 100.1 108 57.4
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 3.1e-19 98.6 91 63.7
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 3.1e-19 98.6 88 64.8
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 3.1e-19 98.6 86 64.0
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 3.1e-19 98.6 85 67.1
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.1e-19 98.2 85 63.5
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 4.1e-19 98.2 89 62.9
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 5.3e-19 97.8 92 64.1
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 6.9e-19 97.4 78 69.2
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 6.9e-19 97.4 90 61.1
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 9.1e-19 97.1 105 59.0
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 1.2e-18 96.7 87 64.4
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.2e-18 96.7 87 60.9
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 1.5e-18 96.3 108 54.6
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 2.0e-18 95.9 80 66.2
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 2.6e-18 95.5 83 66.3
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 2.6e-18 95.5 88 62.5
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.4e-18 95.1 88 62.5
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 4.5e-18 94.7 85 62.4
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 5.9e-18 94.4 79 67.1
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 5.9e-18 94.4 83 67.5
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 7.7e-18 94.0 90 61.1
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 7.7e-18 94.0 85 62.4
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.0e-17 93.6 89 59.6
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 1.7e-17 92.8 83 62.7
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.7e-17 92.8 86 62.8
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.7e-17 92.8 105 55.2
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 1.7e-17 92.8 87 62.1
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.2e-17 92.4 105 52.4
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 2.2e-17 92.4 89 65.2
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.2e-17 92.4 85 62.4
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 2.2e-17 92.4 80 66.2
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.2e-17 92.4 89 60.7
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 3.8e-17 91.7 86 61.6
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 5.0e-17 91.3 86 64.0
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 8.5e-17 90.5 96 55.2
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 8.5e-17 90.5 83 66.3
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 8.5e-17 90.5 89 58.4
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 8.5e-17 90.5 96 56.2
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 1.4e-16 89.7 88 63.6
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 1.9e-16 89.4 79 65.8
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 2.5e-16 89.0 74 63.5
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 3.2e-16 88.6 85 60.0
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 4.2e-16 88.2 80 66.2
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.5e-16 87.8 87 58.6
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 5.5e-16 87.8 84 59.5
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.5e-16 87.8 102 52.9
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 9.4e-16 87.0 89 64.0
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 9.4e-16 87.0 87 57.5
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 9.4e-16 87.0 87 57.5
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 9.4e-16 87.0 102 51.0
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.2e-15 86.7 91 60.4
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.2e-15 86.7 98 55.1
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 2.1e-15 85.9 79 64.6
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.7e-15 84.7 89 57.3
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 4.7e-15 84.7 82 61.0
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 4.7e-15 84.7 79 60.8
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 4.7e-15 84.7 92 57.6
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 6.1e-15 84.3 96 53.1
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 8.0e-15 84.0 82 61.0
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 8.0e-15 84.0 85 62.4
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 8.0e-15 84.0 85 62.4
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.0e-14 83.6 93 52.7
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 1.0e-14 83.6 85 57.6
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.0e-14 83.6 82 58.5
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.0e-14 83.6 88 55.7
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 1.4e-14 83.2 80 60.0
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 3.0e-14 82.0 80 60.0
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 3.0e-14 82.0 65 67.7
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 8.8e-14 80.5 87 57.5
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.1e-13 80.1 86 59.3
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.1e-13 80.1 86 59.3
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.1e-13 80.1 79 58.2
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 1.5e-13 79.7 92 56.5
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 1.5e-13 79.7 79 65.8
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.0e-13 79.3 86 55.8
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.0e-13 79.3 89 53.9
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 3.3e-13 78.6 75 60.0
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 4.4e-13 78.2 77 55.8
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 4.4e-13 78.2 89 55.1
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 5.7e-13 77.8 60 66.7
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 5.7e-13 77.8 83 54.2
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 7.4e-13 77.4 91 56.0
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 9.7e-13 77.0 84 60.7
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 9.7e-13 77.0 104 50.0
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 9.7e-13 77.0 66 65.2
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 1.3e-12 76.6 61 63.9
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.8e-12 75.5 103 47.6
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.8e-12 75.5 54 70.4
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.8e-12 75.5 91 54.9
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 2.8e-12 75.5 91 54.9
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 3.7e-12 75.1 80 57.5
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 6.3e-12 74.3 82 52.4
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 1.1e-11 73.6 88 52.3
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 1.1e-11 73.6 85 54.1
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.4e-11 72.4 86 53.5
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 2.4e-11 72.4 74 56.8
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 2.4e-11 72.4 95 49.5
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 3.1e-11 72.0 77 57.1
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 3.1e-11 72.0 101 47.5
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.1e-11 71.6 79 55.7
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 4.1e-11 71.6 79 55.7
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 4.1e-11 71.6 82 57.3
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 7.0e-11 70.9 70 52.9
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 9.1e-11 70.5 69 58.0
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 9.1e-11 70.5 74 52.7
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.2e-10 70.1 69 56.5
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.6e-10 69.7 83 49.4
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.0e-10 69.3 74 54.1
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.0e-10 69.3 74 51.4
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.6e-10 68.9 82 51.2
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 2.6e-10 68.9 78 50.0
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 3.5e-10 68.6 83 50.6
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 3.5e-10 68.6 69 55.1
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 4.5e-10 68.2 74 52.7
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 4.5e-10 68.2 69 55.1
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 5.9e-10 67.8 74 52.7
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 5.9e-10 67.8 94 50.0
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 7.7e-10 67.4 86 50.0
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.0e-09 67.0 68 54.4
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 1.0e-09 67.0 83 48.2
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 1.0e-09 67.0 99 49.5
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 1.3e-09 66.6 82 46.3
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 1.3e-09 66.6 82 46.3
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 1.3e-09 66.6 82 46.3
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 1.3e-09 66.6 79 55.7
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 1.7e-09 66.2 74 51.4
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 1.7e-09 66.2 76 52.6
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 1.7e-09 66.2 76 52.6
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 1.7e-09 66.2 87 47.1
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 2.2e-09 65.9 69 55.1
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 2.2e-09 65.9 69 55.1
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 2.2e-09 65.9 69 55.1
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 2.2e-09 65.9 69 55.1
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 2.2e-09 65.9 69 55.1
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 2.9e-09 65.5 82 45.1
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 3.8e-09 65.1 69 53.6
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 3.8e-09 65.1 74 51.4
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 5.0e-09 64.7 74 50.0
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 8.5e-09 63.9 76 51.3
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 8.5e-09 63.9 74 51.4
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 8.5e-09 63.9 74 51.4
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 1.1e-08 63.5 74 51.4
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 1.1e-08 63.5 88 50.0
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.5e-08 63.2 66 57.6
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 3.2e-08 62.0 86 51.2
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 4.2e-08 61.6 73 49.3
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 9.4e-08 60.5 74 48.6
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 9.4e-08 60.5 55 56.4
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 2.7e-07 58.9 53 66.0
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.7e-07 58.9 78 46.2
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 2.7e-07 58.9 89 46.1
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 2.7e-07 58.9 84 46.4
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 2.7e-07 58.9 84 44.0
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 4.7e-07 58.2 56 58.9
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 4.7e-07 58.2 84 51.2
A02p40150 Brassica napus HOM05D003381 ORTHO05D003880 1.4e-06 56.6 58 53.4


User provided reference genes

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