Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 2.7e-64 248.4 120 100.0
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 1.8e-15 86.3 118 45.8
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.5e-14 83.2 116 45.7
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 9.8e-14 80.5 125 43.2
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 1.3e-13 80.1 125 45.6
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 2.2e-13 79.3 113 44.2
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 4.8e-13 78.2 129 38.8
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 4.8e-13 78.2 116 45.7
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 1.4e-12 76.6 126 42.1
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 4.1e-12 75.1 126 41.3
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 9.1e-12 73.9 119 41.2
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 9.1e-12 73.9 119 43.7
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 9.1e-12 73.9 123 39.0
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 1.2e-11 73.6 126 38.9
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 1.6e-11 73.2 124 41.1
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.7e-11 72.4 121 40.5
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.7e-11 72.4 121 40.5
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 2.7e-11 72.4 113 44.2
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 2.7e-11 72.4 112 43.8
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 3.5e-11 72.0 124 42.7
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 3.5e-11 72.0 126 39.7
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 3.5e-11 72.0 111 43.2
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 4.5e-11 71.6 126 39.7
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 5.9e-11 71.2 122 40.2
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 1.0e-10 70.5 128 37.5
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 1.0e-10 70.5 109 45.9
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 1.3e-10 70.1 116 44.8
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 1.3e-10 70.1 112 44.6
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 1.3e-10 70.1 113 43.4
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.3e-10 70.1 122 38.5
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 1.7e-10 69.7 113 42.5
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 1.7e-10 69.7 112 44.6
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.7e-10 69.7 128 38.3
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 2.9e-10 68.9 113 41.6
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 3.8e-10 68.6 122 39.3
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 5.0e-10 68.2 124 37.1
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 5.0e-10 68.2 112 38.4
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 6.6e-10 67.8 112 40.2
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 6.6e-10 67.8 125 39.2
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 6.6e-10 67.8 113 41.6
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 8.6e-10 67.4 119 41.2
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 8.6e-10 67.4 113 38.9
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 8.6e-10 67.4 112 37.5
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 1.1e-09 67.0 124 39.5
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 1.5e-09 66.6 122 41.8
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 2.5e-09 65.9 122 36.9
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.5e-09 65.9 125 36.0
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 2.5e-09 65.9 113 43.4
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 4.2e-09 65.1 115 37.4
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 4.2e-09 65.1 125 35.2
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 5.5e-09 64.7 114 39.5
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 5.5e-09 64.7 127 37.8
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 7.2e-09 64.3 121 37.2
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 7.2e-09 64.3 139 34.5
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 1.2e-08 63.5 119 37.8
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 1.2e-08 63.5 123 39.0
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 2.8e-08 62.4 140 35.7
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 3.6e-08 62.0 121 36.4
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 3.6e-08 62.0 135 37.0
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 3.6e-08 62.0 124 34.7
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 4.7e-08 61.6 126 37.3
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 4.7e-08 61.6 119 38.7
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 4.7e-08 61.6 119 37.8
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 6.1e-08 61.2 121 35.5
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 8.0e-08 60.8 135 34.1
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 8.0e-08 60.8 142 38.0
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 1.0e-07 60.5 118 37.3
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 1.0e-07 60.5 109 36.7
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 1.0e-07 60.5 109 37.6
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 1.0e-07 60.5 109 37.6
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 1.0e-07 60.5 109 36.7
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 1.0e-07 60.5 109 37.6
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 1.0e-07 60.5 126 37.3
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 1.4e-07 60.1 137 34.3
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 1.4e-07 60.1 137 34.3
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 1.4e-07 60.1 120 31.7
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 1.4e-07 60.1 85 43.5
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.4e-07 60.1 125 34.4
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 1.4e-07 60.1 123 38.2
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 1.8e-07 59.7 84 44.0
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 1.8e-07 59.7 108 35.2
Haze_08227 Corylus avellana HOM05D006292 ORTHO05D006110 1.8e-07 59.7 120 33.3
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 1.8e-07 59.7 120 35.8
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 1.8e-07 59.7 131 37.4
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 2.3e-07 59.3 122 36.1
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 3.0e-07 58.9 126 37.3
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 3.0e-07 58.9 108 34.3
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 3.0e-07 58.9 109 36.7
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 3.0e-07 58.9 137 34.3
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 3.0e-07 58.9 137 34.3
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 3.0e-07 58.9 137 34.3
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.0e-07 58.9 126 34.1
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 3.0e-07 58.9 126 34.1
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 3.0e-07 58.9 109 35.8
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 5.2e-07 58.2 117 37.6
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 5.2e-07 58.2 124 33.1
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 6.8e-07 57.8 108 33.3
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 8.9e-07 57.4 124 38.7
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 1.2e-06 57.0 120 35.0
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 1.5e-06 56.6 108 33.3
Rhsim11G0014800 Rhododendron simsii HOM05D006292 ORTHO05D006110 2.0e-06 56.2 84 44.0
Lalb_Chr09g0334701 Lupinus albus HOM05D006292 ORTHO05D006110 2.6e-06 55.8 123 35.8
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 3.4e-06 55.5 139 32.4
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 3.4e-06 55.5 127 34.6
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 4.4e-06 55.1 139 32.4
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 4.4e-06 55.1 116 32.8
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 4.4e-06 55.1 118 38.1


User provided reference genes

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