Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1412 Cannabis sativa HOM05D007891 ORTHO05D009992 7.4e-26 119.8 61 100.0
Prupe.5G135300 Prunus persica HOM05D007891 ORTHO05D009992 6.9e-16 86.7 58 79.3
RcHm_v2.0_Chr7g0187861 Rosa chinensis HOM05D007891 ORTHO05D009992 4.5e-15 84.0 56 76.8
MD00G1096700 Malus domestica HOM05D007891 ORTHO05D009992 1.3e-14 82.4 56 76.8
MD06G1124700 Malus domestica HOM05D007891 ORTHO05D009992 1.3e-14 82.4 58 75.9
Gohir.A02G095100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 2.9e-14 81.3 50 82.0
Ciclev10023227m.g Citrus clementina HOM05D007891 ORTHO05D009992 3.8e-14 80.9 47 87.2
Gohir.D03G088400 Gossypium hirsutum HOM05D007891 ORTHO05D009992 3.8e-14 80.9 50 82.0
Gorai.003G073400 Gossypium raimondii HOM05D007891 ORTHO05D009992 3.8e-14 80.9 50 82.0
Manes.01G000186 Manihot esculenta HOM05D007891 ORTHO05D009992 1.1e-13 79.3 52 76.9
COL.COLO4_10847 Corchorus olitorius HOM05D007891 ORTHO05D009992 2.5e-13 78.2 50 78.0
Potri.011G149400 Populus trichocarpa HOM05D007891 ORTHO05D009992 2.5e-13 78.2 52 78.8
Nn3g18767 Nelumbo nucifera HOM05D007891 ORTHO05D009992 3.2e-13 77.8 52 75.0
PGR042G1189 Punica granatum HOM05D007891 ORTHO05D009992 3.2e-13 77.8 53 71.7
QL12p003189 Quercus lobata HOM05D007891 ORTHO05D009992 3.2e-13 77.8 47 83.0
Thecc.03G215400 Theobroma cacao HOM05D007891 ORTHO05D009992 3.2e-13 77.8 51 76.5
Nn1g05266 Nelumbo nucifera HOM05D007891 ORTHO05D009992 5.5e-13 77.0 52 73.1
Cfa011885 Carpinus fangiana HOM05D007891 ORTHO05D009992 7.2e-13 76.6 57 71.9
Duzib205G0121 Durio zibethinus HOM05D007891 ORTHO05D009992 7.2e-13 76.6 51 72.5
THA.LOC104806463 Tarenaya hassleriana HOM05D007891 ORTHO05D009992 1.0e-11 72.8 59 61.0
Zm00001eb250770 Zea mays HOM05D007891 ORTHO05D009992 1.0e-11 72.8 54 68.5
TWI15G0344 Tripterygium wilfordii HOM05D007891 ORTHO05D009992 2.3e-11 71.6 50 72.0
ATR0579G034 Amborella trichopoda HOM05D007891 ORTHO05D009992 3.0e-11 71.2 57 66.7
Medtr2g016650 Medicago truncatula HOM05D007891 ORTHO05D009992 3.0e-11 71.2 50 74.0
Ca_00459_v3 Cicer arietinum L. HOM05D007891 ORTHO05D009992 6.7e-11 70.1 50 74.0
Gohir.A08G108600 Gossypium hirsutum HOM05D007891 ORTHO05D009992 6.7e-11 70.1 51 66.7
Haze_09219 Corylus avellana HOM05D000010 ORTHO05D000063 8.8e-11 69.7 41 80.5
Gorai.004G128000 Gossypium raimondii HOM05D007891 ORTHO05D009992 8.8e-11 69.7 51 68.6
Os04g0581700 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 2.0e-10 68.6 52 69.2
TPR.G27295 Trifolium pratense HOM05D007891 ORTHO05D009992 2.6e-10 68.2 50 72.0
Zm00001eb072990 Zea mays HOM05D007891 ORTHO05D009992 3.3e-10 67.8 52 69.2
Gohir.D08G121300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 4.4e-10 67.4 51 66.7
Phvul.006G173900 Phaseolus vulgaris HOM05D007891 ORTHO05D009992 5.7e-10 67.0 57 64.9
Gohir.A09G187300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 7.4e-10 66.6 50 68.0
Migut.A01060 Erythranthe guttata HOM05D007891 ORTHO05D009992 9.7e-10 66.2 57 64.9
arahy.Tifrunner.gnm1.ann1.GMZ6HP Arachis hypogaea HOM05D007891 ORTHO05D009992 1.7e-09 65.5 50 68.0
Lj6g0010842 Lotus japonicus HOM05D007891 ORTHO05D009992 1.7e-09 65.5 58 63.8
ClCG01G001300 Citrullus lanatus HOM05D007891 ORTHO05D009992 3.7e-09 64.3 56 60.7
Gohir.D09G182100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 3.7e-09 64.3 50 66.0
Gorai.006G204200 Gossypium raimondii HOM05D007891 ORTHO05D009992 3.7e-09 64.3 50 66.0
CsaV3_5G001430 Cucumis sativus L. HOM05D007891 ORTHO05D009992 8.2e-09 63.2 45 68.9
SalBow6G2331 Salvia bowleyana HOM05D007891 ORTHO05D009992 2.4e-08 61.6 51 64.7
CSS0018813 Camellia sinensis var. sinensis HOM05D007891 ORTHO05D009992 3.1e-08 61.2 56 60.7
PSO063G6751 Papaver somniferum HOM05D007891 ORTHO05D009992 3.1e-08 61.2 47 66.0
Actinidia22232 Actinidia chinensis HOM05D007891 ORTHO05D009992 4.1e-08 60.8 59 57.6
Os07g0469200 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 4.1e-08 60.8 59 59.3
Eucgr.L00345 Eucalyptus grandis HOM05D007891 ORTHO05D009992 1.2e-07 59.3 51 58.8
Lalb_Chr20g0117551 Lupinus albus HOM05D007891 ORTHO05D009992 1.2e-07 59.3 50 62.0
CiPaw.11G108500 Carya illinoinensis HOM05D007891 ORTHO05D009992 2.6e-07 58.2 40 70.0
Potri.001G452500 Populus trichocarpa HOM05D007891 ORTHO05D009992 2.6e-07 58.2 42 66.7
A09p33310 Brassica napus HOM05D007891 ORTHO05D009992 3.4e-07 57.8 65 47.7
C05p32460 Brassica napus HOM05D007891 ORTHO05D009992 3.4e-07 57.8 65 47.7
BolC5t31978H Brassica oleracea HOM05D007891 ORTHO05D009992 3.4e-07 57.8 65 47.7
BraA09t38876Z Brassica rapa HOM05D007891 ORTHO05D009992 3.4e-07 57.8 65 47.7
Sed0006175 Sechium edule HOM05D007891 ORTHO05D009992 3.4e-07 57.8 44 63.6
BolC8t47912H Brassica oleracea HOM05D007891 ORTHO05D009992 5.9e-07 57.0 53 50.9
AT1G33055 Arabidopsis thaliana HOM05D007891 ORTHO05D009992 7.7e-07 56.6 65 47.7
AL1G47370 Arabidopsis lyrata HOM05D007891 ORTHO05D009992 1.3e-06 55.8 60 50.0
BcaNung04896 Brassica carinata HOM05D007891 ORTHO05D009992 1.3e-06 55.8 45 55.6
Carub.0001s3132 Capsella rubella HOM05D007891 ORTHO05D009992 1.7e-06 55.5 45 57.8
Zm00001eb096350 Zea mays HOM05D007891 ORTHO05D009992 2.9e-06 54.7 51 60.8
Zm00001eb096380 Zea mays HOM05D007891 ORTHO05D009992 2.9e-06 54.7 51 60.8
Thhalv10009221m.g Eutrema salsugineum HOM05D007891 ORTHO05D009992 3.8e-06 54.3 60 46.7
BcaB03g13704 Brassica carinata HOM05D007891 ORTHO05D009992 6.5e-06 53.5 65 43.1
Zm00001eb096410 Zea mays HOM05D007891 ORTHO05D009992 6.5e-06 53.5 51 58.8
Zm00001eb096420 Zea mays HOM05D007891 ORTHO05D009992 6.5e-06 53.5 51 58.8
Nn1g03657 Nelumbo nucifera HOM05D007891 ORTHO05D009992 8.5e-06 53.1 39 64.1
HPP92_022259 Vanilla planifolia HOM05D007891 ORTHO05D009992 8.5e-06 53.1 47 61.7
Zm00001eb096470 Zea mays HOM05D007891 ORTHO05D009992 8.5e-06 53.1 51 58.8


User provided reference genes

Program Settings