Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 6.1e-246 854.0 518 100.0
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 2.7e-169 599.4 449 78.2
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 4.3e-167 592.0 466 75.3
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.6e-166 590.1 455 80.9
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 3.4e-164 582.4 457 74.8
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.3e-163 580.5 466 74.5
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 1.3e-163 580.5 467 74.1
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.1e-162 577.4 447 80.1
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.1e-162 577.4 456 75.4
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.4e-162 577.0 451 80.0
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.2e-162 575.9 452 79.9
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 4.2e-162 575.5 452 79.9
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 4.2e-162 575.5 461 73.3
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 5.5e-162 575.1 464 74.1
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 7.1e-162 574.7 449 78.8
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 7.1e-162 574.7 456 79.6
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.1e-161 573.2 458 68.8
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 3.5e-161 572.4 458 78.6
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 1.3e-160 570.5 444 75.0
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 6.7e-160 568.2 438 76.7
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 6.7e-160 568.2 457 77.2
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.5e-159 567.0 467 71.7
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.5e-159 567.0 467 75.6
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 1.5e-159 567.0 471 71.3
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 5.6e-159 565.1 465 72.7
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 9.6e-159 564.3 461 72.5
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.3e-158 563.9 458 77.5
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 1.3e-158 563.9 467 74.9
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.6e-158 563.5 456 73.0
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 4.8e-158 562.0 457 77.9
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 1.4e-157 560.5 462 72.9
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.2e-156 557.4 473 70.8
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 3.4e-156 555.8 475 74.9
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 2.9e-155 552.7 459 76.9
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 6.5e-155 551.6 446 76.5
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.4e-154 550.4 458 74.9
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 2.5e-154 549.7 439 79.3
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 1.2e-153 547.4 478 72.8
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 2.7e-153 546.2 459 74.9
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 3.9e-152 542.3 431 76.3
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 5.1e-152 542.0 439 78.8
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 6.7e-152 541.6 467 70.7
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 8.7e-152 541.2 454 71.6
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 1.1e-151 540.8 527 58.8
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 4.3e-151 538.9 471 74.1
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.8e-150 536.2 463 75.4
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-149 534.3 459 75.2
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 2.4e-149 533.1 463 73.4
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 3.1e-149 532.7 471 67.9
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.1e-149 532.3 491 67.8
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 5.3e-149 531.9 469 73.8
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.5e-148 530.4 458 74.9
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 2.0e-148 530.0 478 63.4
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 2.6e-148 529.6 391 79.3
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 2.6e-148 529.6 426 74.4
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 3.4e-148 529.3 472 73.5
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 5.9e-148 528.5 512 67.4
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.3e-147 527.3 453 74.0
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.3e-147 527.3 481 70.9
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 1.7e-147 526.9 471 72.0
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 2.9e-147 526.2 391 84.1
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 3.8e-147 525.8 452 72.3
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 1.1e-146 524.2 470 71.7
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 4.6e-145 518.8 464 67.9
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 1.3e-144 517.3 458 72.5
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.3e-144 516.5 466 72.7
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 3.0e-144 516.2 458 72.3
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 3.9e-144 515.8 451 68.1
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.1e-144 515.4 439 74.7
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 6.7e-144 515.0 464 71.3
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 8.7e-144 514.6 460 69.3
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.5e-143 513.8 453 71.1
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 2.5e-143 513.1 467 68.7
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.6e-142 510.4 439 74.3
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 3.7e-142 509.2 432 71.3
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 8.2e-142 508.1 456 70.6
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 6.9e-141 505.0 464 70.7
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 6.9e-141 505.0 464 70.7
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 6.9e-141 505.0 464 70.7
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 2.0e-140 503.4 375 77.1
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 2.6e-140 503.1 464 70.3
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 2.6e-140 503.1 464 70.3
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.6e-140 503.1 468 70.3
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.6e-140 503.1 432 74.5
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 3.4e-140 502.7 458 70.7
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 4.5e-140 502.3 459 70.6
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.7e-140 501.5 468 70.1
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 2.9e-139 499.6 437 73.2
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 5.0e-139 498.8 493 69.0
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 3.2e-138 496.1 472 69.1
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.2e-138 495.7 485 67.6
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 9.4e-138 494.6 460 67.8
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 6.1e-137 491.9 457 69.4
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 7.9e-137 491.5 472 69.5
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.8e-136 490.3 437 72.3
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 3.9e-136 489.2 396 74.0
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 4.4e-135 485.7 457 67.4
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 1.3e-134 484.2 350 76.3
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 2.8e-134 483.0 456 71.1
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.1e-133 481.1 452 70.8
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 3.1e-133 479.6 465 68.2
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 1.5e-132 477.2 463 59.8
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 2.9e-131 473.0 447 66.4
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 6.5e-131 471.9 477 67.3
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 1.4e-128 464.2 454 63.4
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 1.4e-128 464.2 467 68.3
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 6.3e-126 455.3 468 67.3
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.5e-122 444.1 425 70.6
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 2.6e-119 433.3 459 65.1
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 4.4e-119 432.6 424 68.4
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 1.3e-118 431.0 419 70.6
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 3.7e-118 429.5 474 63.7
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 3.7e-118 429.5 417 66.9
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.1e-117 427.9 438 65.8
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.8e-117 427.2 440 63.2
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 7.7e-108 395.2 434 63.1
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 6.5e-107 392.1 490 51.6
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 5.5e-106 389.0 382 64.4
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.8e-105 386.7 352 67.9
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 5.7e-103 379.0 344 65.4
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 1.6e-100 370.9 325 66.5
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 3.6e-97 359.8 334 74.9
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 1.8e-93 347.4 385 59.7
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 1.6e-92 344.4 343 69.7
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 2.5e-82 310.5 272 59.2
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.2e-81 308.1 395 54.7
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 4.0e-80 303.1 299 73.2
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 3.9e-75 286.6 467 46.5
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 5.6e-74 282.7 237 64.1
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 2.4e-64 250.8 228 75.4
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.0e-63 247.7 395 40.0
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 1.9e-50 204.5 131 77.1
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 9.0e-48 195.7 146 67.1
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 6.7e-43 179.5 175 57.7
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.7e-43 179.5 135 64.4
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.5e-42 178.3 135 63.7
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.3e-42 177.2 135 63.7
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.0e-38 165.6 134 60.4
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.2e-38 164.5 134 60.4
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.8e-38 163.7 162 54.9
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 7.9e-36 156.0 95 83.2
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.7e-34 149.1 171 50.9
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.8e-33 146.7 128 58.6
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 1.1e-26 125.6 307 31.6
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.1e-24 117.5 68 79.4
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 9.1e-24 115.9 84 67.9
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 5.5e-21 106.7 57 89.5
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 4.7e-20 103.6 208 32.2
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 1.0e-19 102.4 86 61.6
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 5.3e-16 90.1 55 76.4
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 3.2e-13 80.9 57 71.9
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 7.2e-13 79.7 71 64.8
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 9.4e-13 79.3 68 64.7
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 6.1e-12 76.6 52 75.0
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.4e-08 65.5 123 38.2


User provided reference genes

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