Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 6.3e-151 537.3 259 100.0
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 4.0e-121 438.3 233 81.5
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 3.4e-120 435.3 233 82.8
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 1.3e-119 433.3 237 81.4
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 1.7e-119 433.0 233 82.0
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 1.7e-119 433.0 228 83.8
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 2.2e-119 432.6 231 80.1
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 2.9e-119 432.2 231 83.1
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 2.9e-119 432.2 232 82.8
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 3.7e-119 431.8 233 82.0
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 3.7e-119 431.8 233 82.0
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 4.9e-119 431.4 231 81.8
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 4.9e-119 431.4 231 80.5
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 6.4e-119 431.0 231 83.1
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 6.4e-119 431.0 231 81.4
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 6.4e-119 431.0 231 82.7
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 6.4e-119 431.0 252 77.4
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 8.3e-119 430.6 241 78.8
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 8.3e-119 430.6 239 80.8
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 1.1e-118 430.3 231 82.7
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 1.1e-118 430.3 231 83.1
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.1e-118 430.3 231 83.1
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.4e-118 429.9 252 77.0
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 1.9e-118 429.5 242 80.6
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.9e-118 429.5 229 80.8
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.9e-118 429.5 228 81.1
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.9e-118 429.5 228 81.1
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 1.9e-118 429.5 232 81.5
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 2.4e-118 429.1 232 81.9
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.4e-118 429.1 231 81.4
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 3.2e-118 428.7 242 78.5
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 4.1e-118 428.3 231 82.7
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 5.4e-118 427.9 229 81.2
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 7.0e-118 427.6 231 81.0
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 7.0e-118 427.6 242 78.1
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 9.2e-118 427.2 242 78.1
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 9.2e-118 427.2 242 80.6
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 9.2e-118 427.2 243 78.2
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 1.2e-117 426.8 242 79.8
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 1.6e-117 426.4 242 79.8
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 1.6e-117 426.4 242 79.8
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 1.6e-117 426.4 231 80.5
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 1.6e-117 426.4 251 75.3
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.0e-117 426.0 231 80.5
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.0e-117 426.0 231 81.0
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 2.7e-117 425.6 231 81.4
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 2.7e-117 425.6 231 81.8
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 6.0e-117 424.5 231 80.1
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 7.8e-117 424.1 243 77.0
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 1.7e-116 422.9 229 81.7
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 1.7e-116 422.9 232 79.7
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 1.7e-116 422.9 231 80.5
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 3.0e-116 422.2 232 79.3
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.9e-116 421.8 232 78.9
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 3.9e-116 421.8 232 80.2
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 5.0e-116 421.4 231 80.1
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 8.6e-116 420.6 243 76.1
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.1e-115 420.2 232 78.9
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 1.1e-115 420.2 231 81.0
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 1.5e-115 419.9 241 77.6
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 3.3e-115 418.7 225 82.2
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.3e-115 418.3 233 79.4
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 4.3e-115 418.3 231 79.7
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 4.3e-115 418.3 246 77.2
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 7.3e-115 417.5 232 79.7
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 9.5e-115 417.2 231 79.2
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.2e-114 416.8 232 78.4
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 1.2e-114 416.8 232 78.0
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 1.6e-114 416.4 225 80.9
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.6e-114 416.4 232 78.0
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.6e-114 415.2 237 76.4
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 6.2e-114 414.5 231 78.4
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 8.0e-114 414.1 241 74.7
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 8.0e-114 414.1 228 78.9
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 8.0e-114 414.1 232 79.3
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.1e-113 413.7 230 79.6
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 1.4e-113 413.3 232 79.7
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.4e-113 413.3 229 78.6
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.8e-113 412.9 242 76.9
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.8e-113 412.9 230 79.6
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.3e-113 412.5 230 79.1
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.3e-113 412.5 232 78.0
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 2.3e-113 412.5 242 76.0
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 2.3e-113 412.5 235 77.4
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 2.3e-113 412.5 231 76.2
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 3.1e-113 412.1 232 77.2
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.0e-113 411.8 237 75.1
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 5.2e-113 411.4 242 75.2
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 5.2e-113 411.4 232 77.2
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 5.2e-113 411.4 235 77.4
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 8.9e-113 410.6 228 78.1
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 8.9e-113 410.6 232 78.0
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 8.9e-113 410.6 226 77.9
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 2.0e-112 409.5 231 78.4
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 2.0e-112 409.5 243 75.7
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 2.6e-112 409.1 231 75.8
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 2.6e-112 409.1 233 78.1
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 3.4e-112 408.7 232 76.3
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 3.4e-112 408.7 231 78.4
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 3.4e-112 408.7 224 79.0
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 3.4e-112 408.7 242 73.6
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 4.4e-112 408.3 232 77.2
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.4e-112 408.3 238 73.9
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 5.8e-112 407.9 225 78.7
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 9.8e-112 407.1 224 79.5
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 1.3e-111 406.8 225 78.2
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 1.7e-111 406.4 226 77.0
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 1.7e-111 406.4 225 79.1
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 2.9e-111 405.6 235 75.7
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 3.7e-111 405.2 223 78.5
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 4.9e-111 404.8 236 73.7
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 4.9e-111 404.8 236 74.2
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 8.3e-111 404.1 225 79.1
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 1.9e-110 402.9 223 78.9
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.9e-110 402.9 236 75.4
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 3.2e-110 402.1 237 72.2
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 1.2e-109 400.2 232 75.4
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.7e-109 399.1 231 74.0
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 6.0e-109 397.9 225 77.8
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 6.0e-109 397.9 232 74.1
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.0e-108 397.1 228 75.0
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.3e-108 396.7 224 75.9
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.3e-108 396.7 224 75.9
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 3.0e-108 395.6 242 70.2
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 5.1e-108 394.8 225 75.6
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 6.6e-108 394.4 231 74.9
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 8.6e-108 394.0 226 75.7
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 1.1e-107 393.7 224 75.4
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-107 393.7 223 76.7
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 3.3e-107 392.1 231 74.5
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 4.3e-107 391.7 231 74.9
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 3.6e-106 388.7 229 73.8
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 4.7e-106 388.3 232 72.4
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 8.1e-106 387.5 225 73.8
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 2.3e-105 386.0 248 71.4
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 3.1e-105 385.6 223 75.3
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.5e-104 383.3 231 71.0
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 2.0e-104 382.9 210 79.5
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.6e-104 382.5 225 74.2
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 9.9e-104 380.6 233 71.7
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 3.2e-102 375.6 228 70.2
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 2.4e-97 359.4 195 81.5
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 5.2e-97 358.2 225 70.2
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 7.6e-96 354.4 223 69.5
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.0e-92 344.0 232 64.2
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.3e-92 342.8 245 62.9
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 3.9e-92 342.0 236 65.7
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 6.6e-92 341.3 229 65.1
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 3.6e-90 335.5 223 64.6
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 9.0e-89 330.9 254 61.4
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 9.9e-88 327.4 232 64.7
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 2.2e-79 299.7 156 82.7
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 2.5e-75 286.2 162 78.4
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 5.6e-75 285.0 156 80.1
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 9.6e-75 284.3 238 55.9
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 6.5e-63 245.0 159 67.3
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 7.2e-54 214.9 231 45.9
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 4.7e-45 185.7 200 49.0
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 4.7e-45 185.7 225 43.1
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 3.2e-38 162.9 96 75.0
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 1.3e-34 151.0 116 63.8
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 5.0e-31 139.0 107 63.6
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.0e-24 117.1 141 45.4
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 6.1e-13 79.0 50 58.0
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 1.8e-12 77.4 64 59.4


User provided reference genes

Program Settings