Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 1.2e-248 862.8 462 100.0
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.3e-170 603.6 460 71.3
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 1.6e-168 596.7 476 69.5
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 4.3e-166 588.6 469 69.1
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 2.8e-165 585.9 462 69.5
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.0e-163 579.7 464 66.6
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 4.4e-163 578.6 464 67.9
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 4.1e-161 572.0 468 67.3
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.2e-160 570.5 460 64.8
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.7e-159 566.6 452 67.3
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 5.6e-158 561.6 463 67.2
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.2e-157 560.5 463 65.7
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 4.7e-157 558.5 455 66.6
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 6.2e-157 558.1 466 65.5
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.0e-156 557.4 463 64.1
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 4.0e-156 555.4 461 65.7
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 5.8e-155 551.6 461 65.1
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 6.4e-154 548.1 461 63.8
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.4e-153 547.0 461 65.1
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.9e-153 546.6 461 63.6
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.9e-153 546.6 460 63.3
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 4.1e-153 545.4 464 65.3
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 7.0e-153 544.7 459 63.6
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 1.6e-152 543.5 465 64.1
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 1.6e-152 543.5 465 63.9
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.6e-152 543.5 463 62.9
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 2.0e-152 543.1 465 63.9
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 6.0e-152 541.6 447 64.2
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 3.9e-151 538.9 434 67.3
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 3.9e-151 538.9 468 63.7
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 8.6e-151 537.7 466 61.8
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 1.5e-150 537.0 463 63.1
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 2.5e-150 536.2 465 62.8
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 2.3e-148 529.6 463 60.9
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 3.4e-147 525.8 464 60.8
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.2e-146 523.1 471 61.1
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 2.9e-146 522.7 461 61.4
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 6.0e-144 515.0 464 61.0
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 7.3e-142 508.1 467 60.4
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 9.5e-142 507.7 425 64.2
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.2e-141 507.3 467 60.2
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 6.2e-141 505.0 464 59.7
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.8e-140 503.4 470 58.3
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 1.2e-139 500.7 463 58.3
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 7.6e-139 498.0 462 59.1
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 7.6e-139 498.0 462 59.1
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 1.7e-138 496.9 463 59.2
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 2.2e-138 496.5 462 58.7
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 2.2e-138 496.5 462 59.1
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 2.2e-138 496.5 463 58.1
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 2.9e-138 496.1 462 58.4
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 2.9e-138 496.1 464 58.4
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 8.4e-138 494.6 464 61.4
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 1.4e-137 493.8 465 58.7
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.4e-137 493.0 462 59.1
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.2e-137 492.7 462 58.7
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 5.4e-137 491.9 462 59.1
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 7.1e-137 491.5 461 58.8
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 9.2e-137 491.1 686 46.1
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 9.2e-137 491.1 408 65.2
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 1.2e-136 490.7 465 58.1
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 2.7e-136 489.6 463 59.2
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 8.6e-135 484.6 464 57.5
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 1.5e-134 483.8 464 57.5
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 9.6e-134 481.1 471 58.6
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 1.2e-133 480.7 369 68.6
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 2.4e-132 476.5 376 66.5
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 1.3e-130 470.7 463 57.7
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.4e-129 467.2 389 63.8
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.9e-129 466.8 462 60.6
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.2e-129 466.1 547 50.8
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.6e-128 462.2 463 55.7
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 1.8e-124 450.3 432 56.7
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.0e-124 449.1 501 53.1
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 9.9e-123 444.5 463 54.0
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 2.9e-122 443.0 527 52.0
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.2e-121 439.5 425 57.2
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 3.2e-121 439.5 392 59.4
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 1.2e-120 437.6 395 58.7
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.5e-115 420.6 463 53.1
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 2.6e-115 419.9 438 55.0
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 9.9e-115 417.9 361 64.5
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 9.9e-115 417.9 476 50.8
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 8.4e-114 414.8 412 56.3
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.1e-113 414.5 436 53.4
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 9.3e-113 411.4 322 64.9
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 3.0e-111 406.4 290 70.7
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 4.3e-110 402.5 381 60.1
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 5.6e-110 402.1 495 49.3
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 1.1e-108 397.9 428 53.0
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 5.8e-107 392.1 477 47.4
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 1.4e-105 387.5 506 50.6
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 2.5e-105 386.7 373 59.2
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.1e-102 377.9 274 73.7
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 4.8e-101 372.5 356 57.6
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 6.3e-101 372.1 358 57.3
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 4.1e-100 369.4 291 64.6
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.3e-98 364.4 465 48.6
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 5.5e-97 359.0 413 51.3
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 9.3e-97 358.2 487 46.4
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 1.9e-89 334.0 346 54.0
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 3.6e-88 329.7 254 65.4
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.0e-87 326.6 265 63.0
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 6.7e-87 325.5 476 45.8
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.4e-86 322.0 303 60.1
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 3.1e-84 316.6 300 58.7
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 8.5e-82 308.5 228 66.7
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 2.6e-75 287.0 247 61.1
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.2e-74 283.9 315 55.9
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 3.2e-73 280.0 380 46.3
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 1.2e-72 278.1 446 41.0
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 6.3e-69 265.8 518 38.0
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.7e-64 250.4 299 50.5
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 6.1e-64 249.2 169 71.0
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.3e-61 241.5 297 48.1
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.3e-50 204.1 203 61.6
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.0e-46 191.0 379 38.5
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.4e-44 184.1 159 60.4
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 2.1e-40 171.0 557 31.4
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 2.1e-40 171.0 170 57.6
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 5.8e-38 162.9 107 73.8
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 7.5e-38 162.5 566 30.9
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.1e-33 148.7 150 56.0
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 3.6e-32 143.7 365 32.1
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 9.9e-30 135.6 167 50.9
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.8e-23 112.8 167 44.3
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.5e-22 111.7 125 49.6
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 7.6e-22 109.4 68 82.4
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 8.4e-21 105.9 138 49.3
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 4.1e-20 103.6 118 52.5
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 2.1e-19 101.3 84 63.1
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 7.3e-17 92.8 121 43.0
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.2e-15 86.7 75 62.7
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.2e-15 86.7 75 62.7
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.2e-14 85.5 75 61.3
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 2.0e-14 84.7 117 45.3
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 9.9e-14 82.4 75 61.3
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 4.2e-12 77.0 81 55.6
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 1.7e-10 71.6 49 69.4
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.9e-09 68.2 141 41.1
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 1.4e-07 62.0 46 67.4
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 1.8e-07 61.6 87 49.4
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 5.8e-06 56.6 64 53.1


User provided reference genes

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