Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 0.0e+00 1124.4 546 100.0
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 2.7e-236 822.0 550 72.0
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 2.4e-232 808.9 586 68.1
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.6e-231 805.4 562 69.8
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 6.4e-230 800.8 562 69.2
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 1.9e-229 799.3 571 69.2
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 7.1e-229 797.3 570 68.8
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.7e-225 785.0 579 67.0
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 3.4e-223 778.5 563 67.0
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 1.0e-222 776.9 563 67.7
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 1.0e-222 776.9 565 67.6
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 6.5e-222 774.2 547 67.8
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.9e-221 772.7 556 66.7
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 2.5e-221 772.3 553 66.9
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 1.0e-219 766.9 554 67.0
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 2.3e-219 765.8 554 68.1
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 2.3e-219 765.8 541 68.4
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 1.5e-218 763.1 557 66.8
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 5.3e-216 754.6 553 66.2
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 5.9e-215 751.1 595 62.5
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 1.0e-214 750.4 534 69.9
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 6.5e-214 747.7 581 62.8
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 8.5e-214 747.3 563 65.5
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 1.1e-213 746.9 558 65.9
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 4.2e-213 745.0 562 66.0
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 5.5e-213 744.6 561 65.8
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 7.2e-213 744.2 510 70.4
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 4.6e-212 741.5 555 65.9
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 6.1e-212 741.1 572 63.6
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 7.9e-212 740.7 552 66.8
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.3e-211 740.0 548 65.3
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 5.1e-211 738.0 552 64.7
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 5.1e-211 738.0 565 63.5
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 6.7e-211 737.6 562 64.2
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.5e-210 736.5 552 64.3
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 1.5e-210 736.5 546 65.2
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 5.7e-210 734.6 554 65.0
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 7.4e-210 734.2 552 63.8
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 1.3e-209 733.4 582 63.1
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 2.2e-209 732.6 559 65.1
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 3.7e-209 731.9 549 65.4
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 3.1e-208 728.8 551 63.5
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 9.1e-208 727.2 551 63.7
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 7.7e-207 724.2 550 64.7
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.0e-206 723.8 549 64.7
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 2.2e-206 722.6 545 62.2
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 2.2e-206 722.6 550 64.7
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 2.9e-206 722.2 526 67.5
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 1.6e-204 716.5 564 63.1
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 1.7e-201 706.4 558 62.0
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.7e-201 706.4 555 61.8
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 8.2e-201 704.1 537 64.2
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 5.5e-197 691.4 592 58.6
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 7.2e-197 691.0 524 64.7
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 4.7e-196 688.3 565 60.4
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 1.0e-195 687.2 552 60.9
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 1.8e-195 686.4 557 60.9
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 3.0e-195 685.6 545 61.1
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 3.9e-195 685.3 551 61.0
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 1.5e-194 683.3 550 60.4
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 1.5e-194 683.3 481 67.8
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 4.4e-194 681.8 566 59.9
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 5.7e-194 681.4 543 63.0
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 7.4e-194 681.0 564 59.2
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 2.2e-193 679.5 548 60.0
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 4.1e-192 675.2 548 59.9
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 5.3e-192 674.9 581 59.2
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 2.0e-191 672.9 583 57.6
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 3.5e-191 672.2 543 60.2
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 5.9e-191 671.4 551 61.5
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 7.7e-191 671.0 558 59.7
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 7.7e-191 671.0 616 56.7
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 2.5e-189 666.0 515 63.3
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 3.2e-189 665.6 539 60.1
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 5.5e-189 664.8 572 58.2
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 2.7e-188 662.5 548 59.1
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 1.0e-187 660.6 548 59.1
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 3.0e-187 659.1 595 56.0
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 5.7e-186 654.8 606 55.3
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 2.8e-185 652.5 547 58.9
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 4.8e-185 651.7 545 58.5
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 9.1e-184 647.5 539 59.4
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 1.6e-183 646.7 475 65.7
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 2.9e-182 642.5 479 63.9
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 7.2e-181 637.9 491 65.2
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 1.8e-179 633.3 579 54.6
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 7.5e-178 627.9 563 56.3
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 1.3e-177 627.1 546 58.8
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 2.8e-177 625.9 539 57.0
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 3.8e-174 615.5 371 77.4
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 9.8e-170 600.9 556 55.9
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 3.7e-169 599.0 472 61.0
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.2e-164 583.9 449 65.0
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 1.4e-163 580.5 439 65.8
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 3.0e-158 562.8 394 69.3
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 6.2e-156 555.1 389 67.6
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 1.5e-154 550.4 572 52.4
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 1.3e-153 547.4 346 73.1
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 6.4e-153 545.0 607 49.1
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 7.0e-152 541.6 384 65.1
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 9.2e-152 541.2 545 54.1
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 2.1e-148 530.0 432 60.2
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 8.1e-148 528.1 349 73.4
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 6.4e-145 518.5 540 52.2
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 1.0e-142 511.1 346 67.9
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 8.6e-134 481.5 471 53.3
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 3.8e-129 466.1 346 64.2
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.1e-128 464.5 323 67.8
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 2.1e-127 460.3 444 49.3
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 2.7e-127 459.9 327 67.3
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 4.0e-123 446.0 370 60.8
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.9e-121 439.9 461 51.4
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 1.9e-120 437.2 300 68.0
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 2.3e-118 430.3 300 66.3
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.1e-117 427.9 500 44.0
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 9.6e-117 424.9 322 62.7
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 7.9e-111 405.2 517 42.2
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 4.5e-106 389.4 311 61.7
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 4.6e-95 352.8 246 70.7
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.8e-94 350.9 250 66.8
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.7e-92 343.2 257 65.0
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 5.5e-88 329.3 214 70.6
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 9.4e-80 302.0 489 34.8
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.6e-77 293.9 243 59.3
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.6e-71 273.5 242 56.2
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.8e-67 261.2 227 58.6
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.2e-65 254.2 161 73.9
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 2.3e-57 227.6 145 72.4
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.7e-55 219.9 192 56.2
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.1e-51 206.8 137 71.5
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 2.5e-40 171.0 166 59.6
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 3.2e-35 154.1 172 40.7
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 3.2e-35 154.1 155 54.2
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 4.1e-35 153.7 205 46.3
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 1.7e-33 148.3 171 49.7
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 9.5e-32 142.5 152 52.6
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.1e-31 141.4 173 45.7
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.3e-30 137.9 149 45.0
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 5.2e-30 136.7 124 53.2
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 2.6e-29 134.4 134 51.5
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 4.6e-26 123.6 86 70.9
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 1.9e-24 118.2 83 69.9
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 5.3e-14 83.6 105 45.7
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.9e-11 75.1 71 49.3
CSS0042485 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 3.0e-09 67.8 97 38.1
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 3.9e-09 67.4 68 45.6


User provided reference genes

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