Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 8.9e-143 510.4 246 100.0
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 2.0e-57 226.9 216 54.2
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.3e-57 226.1 172 64.0
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 3.1e-55 219.5 152 69.1
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 1.2e-46 191.0 143 62.9
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 1.6e-46 190.7 143 62.9
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 5.9e-46 188.7 155 60.6
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 2.1e-43 180.3 176 52.3
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.4e-39 167.5 158 53.2
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 4.1e-39 166.0 156 52.6
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.4e-39 165.6 159 56.0
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 4.5e-38 162.5 141 56.7
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.0e-37 161.4 155 53.5
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 4.0e-34 149.4 152 52.6
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 4.0e-34 149.4 141 55.3
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 6.8e-34 148.7 149 52.3
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.5e-33 147.5 149 53.7
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.2e-32 143.7 146 52.7
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 4.1e-31 139.4 154 50.0
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 6.4e-24 115.5 159 42.1
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.9e-23 114.0 154 43.5
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 4.1e-23 112.8 149 42.3
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 2.3e-21 107.1 107 48.6
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.5e-20 103.6 158 42.4
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 5.6e-20 102.4 176 40.9
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 1.4e-18 97.8 140 41.4
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.4e-18 97.8 163 39.3
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 1.4e-18 97.8 129 43.4
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 1.5e-17 94.4 115 46.1
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.3e-16 91.3 178 36.5
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 2.9e-16 90.1 151 37.7
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.1e-15 88.2 162 38.3
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.1e-15 88.2 164 38.4
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 5.4e-15 85.9 156 39.7
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.2e-14 84.7 161 37.9
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 2.7e-14 83.6 171 38.6
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 1.7e-13 80.9 161 37.3
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 1.7e-13 80.9 161 36.6
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 3.0e-13 80.1 175 34.9
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 3.9e-13 79.7 161 37.9
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 5.1e-13 79.3 168 35.1
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 6.6e-13 79.0 141 39.0
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.5e-12 77.8 142 37.3
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 1.5e-12 77.8 186 34.9
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.9e-12 77.4 168 35.1
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 1.9e-12 77.4 160 35.6
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 2.5e-12 77.0 164 35.4
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 3.3e-12 76.6 134 36.6
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 3.3e-12 76.6 168 35.1
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 3.3e-12 76.6 169 34.9
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.3e-12 76.3 151 36.4
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 5.6e-12 75.9 152 38.2
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 7.3e-12 75.5 148 35.8
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 7.3e-12 75.5 142 38.0
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 7.3e-12 75.5 157 37.6
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 7.3e-12 75.5 159 36.5
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 9.5e-12 75.1 178 34.3
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 1.2e-11 74.7 160 36.2
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 1.2e-11 74.7 150 36.0
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.2e-11 74.7 144 36.1
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 1.6e-11 74.3 154 34.4
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.6e-11 74.3 157 37.6
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 2.1e-11 73.9 174 35.6
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 2.1e-11 73.9 160 34.4
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 2.1e-11 73.9 175 34.3
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 2.1e-11 73.9 145 35.9
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.1e-11 73.9 162 33.3
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 2.1e-11 73.9 159 35.2
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 2.8e-11 73.6 162 32.7
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 2.8e-11 73.6 165 34.5
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 2.8e-11 73.6 174 33.3
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 2.8e-11 73.6 160 33.8
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.8e-11 73.6 153 35.9
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 2.8e-11 73.6 152 36.2
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 3.6e-11 73.2 166 33.7
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 3.6e-11 73.2 169 34.9
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 3.6e-11 73.2 169 34.9
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 3.6e-11 73.2 152 37.5
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 3.6e-11 73.2 162 33.3
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 3.6e-11 73.2 162 33.3
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 4.7e-11 72.8 185 30.8
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 4.7e-11 72.8 185 30.8
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 4.7e-11 72.8 158 34.2
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 4.7e-11 72.8 148 35.8
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 6.2e-11 72.4 104 38.5
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.2e-11 72.4 152 34.2
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 6.2e-11 72.4 136 39.0
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 8.1e-11 72.0 166 35.5
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 8.1e-11 72.0 133 37.6
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 8.1e-11 72.0 174 34.5
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 8.1e-11 72.0 165 35.2
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 8.1e-11 72.0 165 33.9
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 8.1e-11 72.0 168 33.3
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 1.1e-10 71.6 148 35.1
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.1e-10 71.6 159 35.2
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 1.1e-10 71.6 157 36.3
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.1e-10 71.6 157 36.3
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.1e-10 71.6 157 36.3
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.1e-10 71.6 143 36.4
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.4e-10 71.2 150 34.0
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.8e-10 70.9 165 30.3
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.8e-10 70.9 173 35.8
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.8e-10 70.9 157 36.3
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.8e-10 70.9 167 34.7
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.8e-10 70.9 170 33.5
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 2.4e-10 70.5 153 36.6
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.4e-10 70.5 151 35.8
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.1e-10 70.1 153 35.3
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.1e-10 70.1 160 33.1
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 3.1e-10 70.1 167 34.1
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.1e-10 70.1 175 33.7
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 4.0e-10 69.7 170 32.4
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 5.2e-10 69.3 171 33.9
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 5.2e-10 69.3 165 32.1
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 5.2e-10 69.3 177 33.3
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 5.2e-10 69.3 175 33.7
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 6.8e-10 68.9 151 35.1
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.5e-09 67.8 173 32.9
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 2.0e-09 67.4 179 31.8
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.6e-09 67.0 167 32.9
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 2.6e-09 67.0 160 35.0
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 2.6e-09 67.0 152 35.5
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.6e-09 67.0 173 32.9
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 2.6e-09 67.0 164 32.3
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 3.4e-09 66.6 51 58.8
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 4.4e-09 66.2 173 31.8
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 4.4e-09 66.2 171 31.0
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.8e-09 65.9 153 33.3
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 5.8e-09 65.9 186 32.8
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 5.8e-09 65.9 78 47.4
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 7.6e-09 65.5 151 35.1
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.6e-09 65.5 168 32.1
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 7.6e-09 65.5 174 31.0
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 7.6e-09 65.5 149 33.6
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 9.9e-09 65.1 156 34.0
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 1.3e-08 64.7 132 37.1
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.7e-08 64.3 172 29.7
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 2.9e-08 63.5 175 32.0
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 2.9e-08 63.5 135 35.6
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 3.8e-08 63.2 153 32.7
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 3.8e-08 63.2 189 28.6
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 4.9e-08 62.8 153 32.7
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 4.9e-08 62.8 189 28.6
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 8.4e-08 62.0 43 55.8
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 1.1e-07 61.6 151 35.1
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.1e-07 61.6 144 34.0
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.9e-07 60.8 181 28.7
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 2.4e-07 60.5 44 59.1
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 3.2e-07 60.1 167 29.9
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 5.4e-07 59.3 136 32.4
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 7.1e-07 58.9 64 40.6
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 7.1e-07 58.9 127 33.1
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 1.2e-06 58.2 47 46.8
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.2e-06 58.2 54 42.6
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.6e-06 57.8 47 51.1
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.1e-06 57.4 40 52.5
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 2.1e-06 57.4 61 41.0
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.7e-06 57.0 45 48.9
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.5e-06 56.6 54 42.6
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 3.5e-06 56.6 52 44.2
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 3.5e-06 56.6 34 61.8
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 6.0e-06 55.8 208 25.0
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 7.8e-06 55.5 52 42.3
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 7.8e-06 55.5 52 42.3
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 7.8e-06 55.5 52 42.3
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 7.8e-06 55.5 52 42.3


User provided reference genes

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