Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 4.0e-101 371.7 228 100.0
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 4.2e-50 202.2 229 57.2
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 2.7e-49 199.5 225 58.2
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 7.5e-47 191.4 197 60.4
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.2e-46 189.9 225 60.0
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.8e-46 189.5 225 56.0
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 3.7e-46 189.1 225 59.6
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 4.8e-46 188.7 229 56.3
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 6.3e-46 188.3 225 54.7
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 1.1e-45 187.6 226 56.6
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.4e-45 187.2 225 58.2
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 1.4e-45 187.2 225 62.7
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.4e-45 186.4 225 57.8
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.2e-44 184.1 228 54.8
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 1.6e-44 183.7 225 56.4
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 3.5e-44 182.6 225 59.1
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 3.5e-44 182.6 231 55.0
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 7.7e-44 181.4 228 54.4
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.7e-43 180.3 225 55.6
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 3.8e-43 179.1 228 54.4
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 3.8e-43 179.1 228 54.4
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 8.5e-43 177.9 264 50.0
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.5e-42 177.2 226 54.9
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 3.2e-42 176.0 225 54.7
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 4.2e-42 175.6 229 55.5
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 9.4e-42 174.5 228 52.2
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 9.4e-42 174.5 228 52.2
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 6.1e-41 171.8 225 54.7
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 8.0e-41 171.4 226 53.1
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.8e-40 170.2 225 54.2
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 4.0e-40 169.1 225 52.4
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 4.0e-40 169.1 225 52.4
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 4.0e-40 169.1 226 54.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 5.7e-39 165.2 228 52.2
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 7.5e-39 164.9 198 55.1
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.7e-38 163.7 225 54.7
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 3.7e-38 162.5 225 54.2
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 8.3e-38 161.4 226 52.7
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 1.1e-37 161.0 199 54.8
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.1e-37 161.0 255 47.8
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 1.4e-37 160.6 212 57.1
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.8e-37 160.2 196 57.7
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.8e-37 160.2 196 57.7
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 2.4e-37 159.8 225 53.8
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.4e-37 159.8 225 53.8
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 3.1e-37 159.5 238 50.4
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 7.0e-37 158.3 223 52.5
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 1.2e-36 157.5 211 54.0
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 1.6e-36 157.1 225 54.2
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 7.7e-36 154.8 220 52.3
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.0e-35 154.5 226 53.1
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.7e-35 153.7 253 46.6
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.7e-35 153.7 225 47.6
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 2.3e-35 153.3 230 49.1
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 3.8e-35 152.5 225 49.8
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 5.0e-35 152.1 230 49.6
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 6.6e-35 151.8 229 59.8
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.3e-34 149.4 230 50.0
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 3.3e-34 149.4 229 53.3
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 1.2e-33 147.5 222 48.6
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 1.6e-33 147.1 252 44.8
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 3.6e-33 146.0 326 38.7
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.8e-32 143.7 229 49.8
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 3.0e-32 142.9 225 47.6
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 8.9e-32 141.4 226 49.1
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 8.9e-32 141.4 197 48.7
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 8.9e-32 141.4 227 45.8
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 4.4e-31 139.0 229 47.2
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 3.7e-30 136.0 231 50.2
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 6.3e-30 135.2 116 66.4
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 8.3e-30 134.8 115 67.0
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 8.3e-30 134.8 115 67.0
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 8.3e-30 134.8 199 48.7
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 8.3e-30 134.8 191 50.8
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 1.1e-29 134.4 143 60.8
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 1.4e-29 134.0 221 46.2
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.8e-29 133.7 255 41.2
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.8e-29 133.7 255 41.2
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 5.4e-29 132.1 115 68.7
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 1.2e-28 131.0 224 46.0
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.2e-28 131.0 115 67.0
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.6e-28 130.6 216 52.3
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.7e-28 129.8 219 48.4
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 5.9e-28 128.6 199 43.7
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 1.7e-27 127.1 216 45.8
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 2.9e-27 126.3 115 65.2
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 5.0e-27 125.6 115 64.3
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 6.6e-27 125.2 243 42.4
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 8.6e-27 124.8 233 45.9
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.5e-26 124.0 117 62.4
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.5e-26 123.2 222 45.0
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 2.5e-26 123.2 241 41.9
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 2.5e-26 123.2 231 42.9
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 3.3e-26 122.9 197 46.2
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 5.6e-26 122.1 219 52.5
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 5.6e-26 122.1 219 47.0
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 5.6e-26 122.1 233 44.2
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 5.6e-26 122.1 198 47.5
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.2e-25 120.9 237 48.1
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 1.6e-25 120.6 238 45.0
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 4.7e-25 119.0 115 62.6
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.4e-24 117.5 105 63.8
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 2.3e-24 116.7 226 44.7
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.3e-24 116.7 219 41.6
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 6.8e-24 115.2 116 59.5
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 5.8e-23 112.1 275 40.0
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 8.3e-22 108.2 175 44.0
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 8.3e-22 108.2 133 51.9
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 5.4e-21 105.5 312 35.9
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.6e-20 104.0 276 37.3
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 2.0e-20 103.6 241 41.5
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.9e-19 99.4 120 55.8
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 5.0e-19 99.0 294 35.0
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 1.9e-18 97.1 211 40.3
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 2.5e-18 96.7 113 54.0
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 5.6e-18 95.5 208 39.4
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 5.6e-18 95.5 219 37.9
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 7.3e-18 95.1 111 55.0
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 2.8e-17 93.2 111 52.3
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 4.7e-17 92.4 199 39.7
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 1.4e-16 90.9 206 41.3
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.0e-15 87.0 202 40.1
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 4.4e-15 85.9 133 45.9
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.7e-14 84.0 116 49.1
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.7e-14 84.0 108 50.9
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.7e-14 84.0 108 50.9
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.7e-14 84.0 108 50.9
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 2.2e-14 83.6 77 70.1
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 3.7e-14 82.8 106 50.0
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 6.4e-14 82.0 116 48.3
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 8.3e-14 81.6 209 40.2
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 1.4e-13 80.9 116 48.3
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 4.1e-13 79.3 201 37.3
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 5.4e-13 79.0 204 39.7
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 2.7e-12 76.6 111 47.7
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 1.7e-11 73.9 69 63.8
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.7e-11 73.9 121 47.1
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.6e-09 66.2 72 58.3
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 4.4e-07 59.3 60 63.3
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 5.8e-07 58.9 64 54.7
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 1.7e-06 57.4 58 60.3
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 3.7e-06 56.2 62 54.8


User provided reference genes

Program Settings