Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0844 Cannabis sativa HOM05D007712 ORTHO05D009755 1.4e-19 98.6 50 100.0
Haze_07896 Corylus avellana HOM05D007712 ORTHO05D009755 1.8e-17 91.7 49 91.8
Duzib068G1393 Durio zibethinus HOM05D007712 ORTHO05D009755 1.8e-17 91.7 49 91.8
Cpa.g.sc29.177 Carica papaya HOM05D007712 ORTHO05D009755 6.7e-17 89.7 48 91.7
COL.COLO4_37150 Corchorus olitorius HOM05D007712 ORTHO05D009755 6.7e-17 89.7 48 89.6
Gohir.A12G216100 Gossypium hirsutum HOM05D007712 ORTHO05D009755 8.8e-17 89.4 48 91.7
Prupe.5G067000 Prunus persica HOM05D007712 ORTHO05D009755 8.8e-17 89.4 47 91.5
Thecc.03G249200 Theobroma cacao HOM05D007712 ORTHO05D009755 8.8e-17 89.4 47 93.6
Gohir.D12G218700 Gossypium hirsutum HOM05D007712 ORTHO05D009755 1.1e-16 89.0 47 91.5
Gorai.008G234300 Gossypium raimondii HOM05D007712 ORTHO05D009755 1.1e-16 89.0 47 91.5
CSS0007152 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 1.5e-16 88.6 47 91.5
CSS0012443 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 1.5e-16 88.6 48 89.6
Duzib205G0100 Durio zibethinus HOM05D007712 ORTHO05D009755 1.5e-16 88.6 48 91.7
Glyma.05G061200 Glycine max HOM05D007712 ORTHO05D009755 1.5e-16 88.6 48 87.5
Glyma.17G143000 Glycine max HOM05D007712 ORTHO05D009755 1.5e-16 88.6 48 87.5
MD06G1056600 Malus domestica HOM05D007712 ORTHO05D009755 1.5e-16 88.6 47 91.5
MD04G1062500 Malus domestica HOM05D007712 ORTHO05D009755 2.0e-16 88.2 47 89.4
TWI60G0592 Tripterygium wilfordii HOM05D007712 ORTHO05D009755 2.0e-16 88.2 47 91.5
Ca_21974_v3 Cicer arietinum L. HOM05D007712 ORTHO05D009755 3.3e-16 87.4 47 87.2
Hma1.2p1_0316F.1_g122970 Hydrangea macrophylla HOM05D007712 ORTHO05D009755 3.3e-16 87.4 48 91.7
Manes.02G041000 Manihot esculenta HOM05D007712 ORTHO05D009755 3.3e-16 87.4 47 91.5
Nn1g00955 Nelumbo nucifera HOM05D007712 ORTHO05D009755 4.3e-16 87.0 47 89.4
PGR031G2779 Punica granatum HOM05D007712 ORTHO05D009755 4.3e-16 87.0 48 83.3
DCAR_006839 Daucus carota HOM05D007712 ORTHO05D009755 7.4e-16 86.3 48 85.4
Medtr4g100770 Medicago truncatula HOM05D007712 ORTHO05D009755 7.4e-16 86.3 46 87.0
Aa31LG2G12880 Aethionema arabicum HOM05D007712 ORTHO05D009755 9.7e-16 85.9 48 87.5
Ciclev10023737m.g Citrus clementina HOM05D007712 ORTHO05D009755 9.7e-16 85.9 48 85.4
Manes.01G082000 Manihot esculenta HOM05D007712 ORTHO05D009755 9.7e-16 85.9 47 89.4
Nn6g33914 Nelumbo nucifera HOM05D007712 ORTHO05D009755 1.3e-15 85.5 47 89.4
Psat4g072600 Pisum sativum HOM05D007712 ORTHO05D009755 1.7e-15 85.1 46 87.0
Potri.003G078100 Populus trichocarpa HOM05D007712 ORTHO05D009755 1.7e-15 85.1 48 85.4
VMungo0251G2826 Vigna mungo HOM05D007712 ORTHO05D009755 1.7e-15 85.1 47 85.1
Lj4g0003995 Lotus japonicus HOM05D007712 ORTHO05D009755 2.2e-15 84.7 47 83.0
BcaNung00160 Brassica carinata HOM05D007712 ORTHO05D009755 2.8e-15 84.3 48 85.4
EL10Ac5g12378 Beta vulgaris HOM05D007712 ORTHO05D009755 4.8e-15 83.6 47 83.0
PSO782G1928 Papaver somniferum HOM05D007712 ORTHO05D009755 4.8e-15 83.6 48 85.4
RcHm_v2.0_Chr7g0203631 Rosa chinensis HOM05D007712 ORTHO05D009755 4.8e-15 83.6 47 85.1
CiPaw.11G080700 Carya illinoinensis HOM05D007712 ORTHO05D009755 6.3e-15 83.2 47 85.1
DCAR_008500 Daucus carota HOM05D007712 ORTHO05D009755 6.3e-15 83.2 48 79.2
AL7G38040 Arabidopsis lyrata HOM05D007712 ORTHO05D009755 8.2e-15 82.8 47 85.1
Carub.0007s2470 Capsella rubella HOM05D007712 ORTHO05D009755 8.2e-15 82.8 47 85.1
CARHR223220 Cardamine hirsuta HOM05D007712 ORTHO05D009755 8.2e-15 82.8 47 85.1
ClCG01G004140 Citrullus lanatus HOM05D007712 ORTHO05D009755 8.2e-15 82.8 46 87.0
PSO063G7306 Papaver somniferum HOM05D007712 ORTHO05D009755 8.2e-15 82.8 47 83.0
Sp7g15330 Schrenkiella parvula HOM05D007712 ORTHO05D009755 8.2e-15 82.8 47 85.1
A01p20590 Brassica napus HOM05D007712 ORTHO05D009755 1.1e-14 82.4 48 81.2
C01p25890 Brassica napus HOM05D007712 ORTHO05D009755 1.1e-14 82.4 48 81.2
BraA01t01987Z Brassica rapa HOM05D007712 ORTHO05D009755 1.1e-14 82.4 48 81.2
Phvul.003G221800 Phaseolus vulgaris HOM05D007712 ORTHO05D009755 1.1e-14 82.4 48 83.3
Potri.001G156500 Populus trichocarpa HOM05D007712 ORTHO05D009755 1.1e-14 82.4 49 89.8
Eucgr.E00411 Eucalyptus grandis HOM05D007712 ORTHO05D009755 1.4e-14 82.0 53 77.4
Lsat_1_v5_gn_6_18000 Lactuca sativa HOM05D007712 ORTHO05D009755 1.4e-14 82.0 47 78.7
AT4G16695 Arabidopsis thaliana HOM05D007712 ORTHO05D009755 1.8e-14 81.6 47 83.0
BolC1t02534H Brassica oleracea HOM05D007712 ORTHO05D009755 1.8e-14 81.6 47 83.0
HanXRQChr16g0510951 Helianthus annuus HOM05D007712 ORTHO05D009755 1.8e-14 81.6 47 80.9
HanXRQChr11g0345641 Helianthus annuus HOM05D007712 ORTHO05D009755 4.1e-14 80.5 48 79.2
Nitab4.5_0001381g0130 Nicotiana tabacum HOM05D007712 ORTHO05D009755 4.1e-14 80.5 49 75.5
TAR629G1768 Trochodendron aralioides HOM05D007712 ORTHO05D009755 4.1e-14 80.5 47 83.0
BcaC06g33508 Brassica carinata HOM05D007712 ORTHO05D009755 5.3e-14 80.1 45 86.7
C07p48200 Brassica napus HOM05D007712 ORTHO05D009755 5.3e-14 80.1 45 86.7
BolC7t45343H Brassica oleracea HOM05D007712 ORTHO05D009755 5.3e-14 80.1 45 86.7
Nitab4.5_0002289g0090 Nicotiana tabacum HOM05D007712 ORTHO05D009755 5.3e-14 80.1 49 73.5
HanXRQChr13g0400821 Helianthus annuus HOM05D007712 ORTHO05D009755 6.9e-14 79.7 48 79.2
Solyc08g078480.3 Solanum lycopersicum HOM05D007712 ORTHO05D009755 9.1e-14 79.3 49 75.5
ATR0317G046 Amborella trichopoda HOM05D007712 ORTHO05D009755 1.2e-13 79.0 48 77.1
PGSC0003DMG402004821 Solanum tuberosum HOM05D007712 ORTHO05D009755 1.2e-13 79.0 49 73.5
MELO3C005524.2 Cucumis melo HOM05D007712 ORTHO05D009755 1.5e-13 78.6 48 85.4
Migut.A01117 Erythranthe guttata HOM05D007712 ORTHO05D009755 2.0e-13 78.2 48 81.2
Sed0021045 Sechium edule HOM05D007712 ORTHO05D009755 2.0e-13 78.2 48 83.3
THA.LOC104815500 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 2.0e-13 78.2 48 81.2
CAN.G1178.28 Capsicum annuum HOM05D007712 ORTHO05D009755 2.6e-13 77.8 50 72.0
CiPaw.12G051200 Carya illinoinensis HOM05D007712 ORTHO05D009755 1.0e-12 75.9 48 83.3
Pp3c5_22940 Physcomitrium patens HOM05D007712 ORTHO05D009755 1.3e-12 75.5 47 74.5
vmacro00192 Vaccinium macrocarpon HOM05D007712 ORTHO05D009755 1.3e-12 75.5 47 74.5
BraA08t33255Z Brassica rapa HOM05D007712 ORTHO05D009755 2.2e-12 74.7 45 80.0
HPP92_021033 Vanilla planifolia HOM05D007712 ORTHO05D009755 2.9e-12 74.3 47 78.7
HPP92_027434 Vanilla planifolia HOM05D007712 ORTHO05D009755 2.9e-12 74.3 47 78.7
SHI02516 Sapria himalayana HOM05D007712 ORTHO05D009755 6.5e-12 73.2 47 80.9
Mapoly0033s0142 Marchantia polymorpha HOM05D007712 ORTHO05D009755 8.5e-12 72.8 47 72.3
Lalb_Chr16g0386781 Lupinus albus HOM05D007712 ORTHO05D009755 1.4e-11 72.0 42 76.2
Duzib268G1849 Durio zibethinus HOM05D007712 ORTHO05D009755 4.2e-11 70.5 46 73.9
unitig_744.g24472 Utricularia gibba HOM05D007712 ORTHO05D009755 5.5e-11 70.1 48 70.8
Lalb_Chr05g0221211 Lupinus albus HOM05D007712 ORTHO05D009755 1.6e-10 68.6 42 69.0
CBR_g755 Chara braunii HOM05D007712 ORTHO05D009755 5.1e-09 63.5 47 63.8
A03p50120 Brassica napus HOM05D007712 ORTHO05D009755 1.5e-08 62.0 46 65.2
Os03g0102000 Oryza sativa ssp. japonica HOM05D007712 ORTHO05D009755 9.7e-08 59.3 58 55.2
FAN08G0196 Fragaria x ananassa HOM05D007712 ORTHO05D009755 3.7e-07 57.4 29 93.1
THA.LOC104815513 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 8.2e-07 56.2 32 84.4
FAN04G1285 Fragaria x ananassa HOM05D007712 ORTHO05D009755 1.8e-06 55.1 29 89.7


User provided reference genes

Program Settings