Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 2.3e-221 771.9 391 100.0
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 1.3e-213 746.1 392 97.4
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 8.9e-133 477.6 391 65.5
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 2.2e-131 473.0 391 65.0
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 6.4e-131 471.5 397 62.0
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 1.4e-130 470.3 379 65.4
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 1.4e-130 470.3 379 66.2
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 1.6e-129 466.8 386 65.3
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 2.1e-129 466.5 390 65.1
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 2.1e-129 466.5 383 63.2
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 4.6e-129 465.3 313 73.2
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 7.8e-129 464.5 385 64.7
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 1.0e-128 464.2 309 75.1
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 1.0e-128 464.2 309 75.1
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 3.9e-128 462.2 373 64.3
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 6.6e-128 461.5 371 65.0
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.1e-127 460.7 383 62.4
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 1.5e-127 460.3 390 64.6
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 3.3e-127 459.1 310 74.2
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 3.3e-127 459.1 397 62.2
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 5.6e-127 458.4 326 72.4
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 7.3e-127 458.0 375 65.1
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 9.6e-127 457.6 306 72.9
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 9.6e-127 457.6 349 67.0
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 4.8e-126 455.3 344 66.6
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 6.2e-126 454.9 390 63.8
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 1.1e-125 454.1 311 72.7
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 4.0e-125 452.2 382 63.1
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 4.0e-125 452.2 312 72.8
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 4.0e-125 452.2 309 71.2
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 6.9e-125 451.4 312 70.8
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.6e-124 449.5 400 60.0
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 1.3e-123 447.2 388 61.6
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 1.3e-123 447.2 304 72.7
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.7e-123 446.8 421 57.7
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 4.9e-123 445.3 392 62.0
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 1.1e-122 444.1 314 71.0
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 1.9e-122 443.4 361 64.3
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 2.4e-122 443.0 386 61.4
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 3.2e-122 442.6 356 64.3
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 5.4e-122 441.8 316 69.0
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 3.0e-120 436.0 326 69.6
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 1.1e-119 434.1 437 54.9
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 2.5e-119 433.0 315 68.3
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 1.4e-117 427.2 305 67.9
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 1.8e-117 426.8 310 69.0
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 2.4e-117 426.4 310 68.4
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 2.4e-117 426.4 309 69.3
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 3.1e-117 426.0 310 68.7
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 4.0e-117 425.6 310 68.7
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 4.0e-117 425.6 314 68.2
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 6.9e-117 424.9 310 68.1
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 6.9e-117 424.9 310 68.1
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 1.2e-116 424.1 310 68.1
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 1.5e-116 423.7 310 68.1
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 3.4e-116 422.5 310 68.1
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 3.8e-115 419.1 344 64.8
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 1.1e-114 417.5 319 65.2
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 1.9e-114 416.8 314 64.6
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 1.9e-114 416.8 343 63.6
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 1.9e-114 416.8 343 63.6
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 3.2e-114 416.0 334 63.8
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 7.1e-114 414.8 321 65.7
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 7.1e-114 414.8 298 69.1
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 9.3e-114 414.5 334 64.1
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 1.2e-113 414.1 302 67.5
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 1.2e-113 414.1 309 66.0
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 2.1e-113 413.3 332 63.0
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 1.0e-112 411.0 379 57.3
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 1.0e-112 411.0 344 60.5
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 3.0e-112 409.5 330 63.6
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 1.5e-111 407.1 320 65.0
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 1.9e-111 406.8 389 57.6
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 3.3e-111 406.0 387 58.4
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 4.8e-110 402.1 367 58.9
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 1.3e-107 394.0 311 65.9
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.9e-106 390.2 287 67.6
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 1.2e-105 387.5 344 61.0
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 1.6e-105 387.1 267 71.9
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 3.5e-105 386.0 303 64.7
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 6.0e-105 385.2 313 62.6
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 1.3e-104 384.0 344 60.5
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 1.8e-104 383.6 316 60.1
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 3.9e-104 382.5 376 55.3
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 3.9e-104 382.5 310 63.2
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 5.1e-104 382.1 310 61.9
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 7.4e-103 378.3 318 63.2
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 3.1e-101 372.9 302 60.6
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 4.1e-101 372.5 369 55.6
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 7.6e-100 368.2 273 66.3
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 5.5e-98 362.1 310 59.4
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 7.4e-95 351.7 278 64.4
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 4.8e-94 349.0 285 62.5
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 2.1e-89 333.6 338 54.4
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 3.9e-88 329.3 285 60.4
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 1.1e-87 327.8 486 44.2
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.5e-87 327.4 322 57.8
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 7.4e-87 325.1 328 54.9
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 4.8e-86 322.4 226 69.5
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 8.2e-86 321.6 297 54.2
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 2.4e-77 293.5 268 57.5
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 2.4e-77 293.5 331 46.8
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 1.9e-74 283.9 314 46.8
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 5.2e-72 275.8 305 46.6
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 2.2e-67 260.4 303 44.6
Manes.15G185701 Manihot esculenta HOM05D006137 ORTHO05D007697 1.0e-64 251.5 204 67.2
Ca_25185_v3 Cicer arietinum L. HOM05D006137 ORTHO05D007697 3.0e-64 250.0 220 59.5
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 5.4e-61 239.2 159 78.0
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.3e-56 223.8 198 60.1
Oeu033557.2 Olea europaea HOM05D006137 ORTHO05D007697 4.4e-47 193.0 149 62.4
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 5.4e-45 186.0 161 62.7
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 1.6e-44 184.5 170 60.6
AUR62040998 Chenopodium quinoa HOM05D006137 ORTHO05D007697 5.6e-42 176.0 136 63.2
AUR62002645 Chenopodium quinoa HOM05D006137 ORTHO05D007697 7.3e-42 175.6 190 52.1
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 1.4e-40 171.4 161 58.4
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 8.9e-40 168.7 161 57.8
Hund09821 Selenicereus undatus HOM05D006137 ORTHO05D000006 3.9e-35 153.3 140 53.6
Glyma.07G152633 Glycine max HOM05D006137 ORTHO05D007697 8.6e-35 152.1 112 68.8
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 8.9e-32 142.1 186 45.2
MCO11G470 Micromonas commoda HOM05D006137 ORTHO05D007697 1.5e-31 141.4 206 35.4
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 5.4e-29 132.9 95 72.6
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 1.4e-24 118.2 127 50.4
PRCOL_00002339 Prasinoderma coloniale HOM05D006137 ORTHO05D007697 5.2e-24 116.3 204 32.8
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 1.5e-10 71.6 36 83.3
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 1.5e-10 71.6 36 83.3
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 1.1e-08 65.5 31 83.9
MCO12G135 Micromonas commoda HOM05D002058 ORTHO05D003758 4.0e-08 63.5 112 31.2
SEGI_36463 Sequoiadendron giganteum HOM05D002058 ORTHO05D009216 4.0e-08 63.5 122 33.6
BcaC09g50780 Brassica carinata HOM05D006137 ORTHO05D007697 2.6e-07 60.8 98 45.9
Mapoly0089s0033 Marchantia polymorpha HOM05D002058 ORTHO05D003758 4.5e-07 60.1 178 29.2
Cre16.g659850 Chlamydomonas reinhardtii HOM05D006137 ORTHO05D007697 1.3e-06 58.5 214 23.8


User provided reference genes

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