Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 2.4e-142 508.8 255 100.0
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 1.3e-92 343.6 238 74.8
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.3e-92 343.6 238 74.8
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 3.6e-90 335.5 242 71.9
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 4.7e-90 335.1 238 74.4
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 4.7e-90 335.1 234 72.6
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 6.1e-90 334.7 238 73.5
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 2.3e-89 332.8 274 66.4
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 2.3e-89 332.8 262 69.5
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 3.0e-89 332.4 238 72.7
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 4.0e-89 332.0 238 73.1
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 6.8e-89 331.3 259 68.7
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 1.5e-88 330.1 251 70.9
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 7.5e-88 327.8 235 72.3
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.2e-87 326.2 271 64.6
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 2.8e-87 325.9 268 63.4
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 3.7e-87 325.5 239 70.3
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 4.8e-87 325.1 267 64.8
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 6.3e-87 324.7 271 64.9
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 1.4e-86 323.6 200 78.5
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 1.8e-86 323.2 200 78.5
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 3.1e-86 322.4 257 65.8
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 4.1e-86 322.0 210 75.2
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 1.2e-85 320.5 200 78.5
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 2.7e-85 319.3 209 75.6
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 3.5e-85 318.9 215 73.0
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 3.5e-85 318.9 246 66.3
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 3.5e-85 318.9 265 64.5
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 4.5e-85 318.5 224 71.9
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 2.2e-84 316.2 253 64.4
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 5.0e-84 315.1 207 74.9
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 6.5e-84 314.7 267 62.2
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 8.5e-84 314.3 216 71.8
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 8.5e-84 314.3 182 80.8
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 1.1e-83 313.9 242 66.5
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 1.1e-83 313.9 212 75.5
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 2.5e-83 312.8 254 65.4
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 2.5e-83 312.8 214 71.0
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 3.2e-83 312.4 208 76.4
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 4.2e-83 312.0 207 72.9
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 4.2e-83 312.0 208 73.6
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 5.5e-83 311.6 263 65.4
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 1.2e-82 310.5 211 74.4
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 1.2e-82 310.5 253 65.2
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 1.6e-82 310.1 225 71.6
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 2.1e-82 309.7 207 72.0
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 2.1e-82 309.7 258 63.2
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 2.7e-82 309.3 219 70.8
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 4.7e-82 308.5 178 84.3
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 6.1e-82 308.1 177 84.2
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 8.0e-82 307.8 187 81.3
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 8.0e-82 307.8 187 81.3
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 1.8e-81 306.6 230 70.4
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 2.3e-81 306.2 238 68.5
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 3.0e-81 305.8 216 70.4
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 5.2e-81 305.1 203 72.4
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 6.8e-81 304.7 254 65.0
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 8.8e-81 304.3 181 81.8
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 1.2e-80 303.9 176 83.0
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 1.5e-80 303.5 176 81.2
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 3.4e-80 302.4 267 60.7
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 1.3e-79 300.4 180 77.8
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 1.1e-78 297.4 247 64.4
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 1.4e-78 297.0 182 75.8
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 2.4e-78 296.2 254 63.4
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 2.4e-78 296.2 204 71.6
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 4.1e-78 295.4 235 65.1
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 4.1e-78 295.4 247 61.5
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 5.4e-78 295.0 274 57.7
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 2.0e-77 293.1 237 63.3
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 7.7e-77 291.2 221 64.7
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 1.7e-76 290.0 181 76.8
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 1.7e-76 290.0 241 59.8
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.7e-76 290.0 221 64.7
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 2.9e-76 289.3 253 57.7
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 5.0e-76 288.5 204 67.2
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 1.5e-75 287.0 162 80.2
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.5e-75 287.0 223 64.1
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 2.5e-75 286.2 220 65.5
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 3.3e-75 285.8 255 58.0
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 5.5e-75 285.0 212 67.5
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 5.5e-75 285.0 210 67.6
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 1.6e-74 283.5 220 67.7
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 2.1e-74 283.1 162 83.3
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 2.1e-74 283.1 176 78.4
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 3.6e-74 282.3 187 72.2
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 8.0e-74 281.2 194 69.6
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 1.4e-73 280.4 233 62.2
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 1.8e-73 280.0 207 67.1
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 4.0e-73 278.9 180 72.2
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 7.5e-72 274.6 200 65.5
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 7.5e-72 274.6 174 74.7
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 1.7e-71 273.5 150 86.0
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 1.7e-71 273.5 174 75.9
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 5.9e-69 265.0 248 60.1
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 1.0e-68 264.2 189 65.6
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 2.8e-66 256.1 174 71.3
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 3.7e-63 245.7 200 63.5
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 8.3e-63 244.6 174 69.0
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 2.7e-61 239.6 177 66.1
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 2.5e-59 233.0 186 60.2
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 2.3e-57 226.5 123 83.7
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 2.6e-56 223.0 192 59.9
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 9.8e-56 221.1 200 54.0
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 3.3e-51 206.1 202 52.0
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 2.3e-49 199.9 244 44.7
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 2.0e-48 196.8 177 54.2
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 2.5e-35 153.3 94 72.3
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 3.3e-35 152.9 167 56.9
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 9.9e-32 141.4 159 56.0
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 1.4e-22 110.9 178 38.2
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.4e-22 110.2 123 50.4
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 7.1e-22 108.6 143 49.7
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.0e-20 104.8 169 36.7
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 7.4e-19 98.6 91 62.6
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 9.6e-19 98.2 91 62.6
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 9.6e-19 98.2 117 53.8
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.1e-18 97.1 91 61.5
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 1.8e-17 94.0 91 60.4
SEGI_17791 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 2.2e-15 87.0 152 36.8
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.5e-11 74.3 84 51.2
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.3e-10 71.2 73 53.4
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 6.3e-10 68.9 73 58.9
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 6.3e-10 68.9 49 67.3
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 1.0e-07 61.6 72 54.2
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 1.3e-07 61.2 72 52.8


User provided reference genes

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