Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 7.5e-284 979.9 528 100.0
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 5.5e-218 761.1 515 80.8
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 2.5e-215 752.3 520 79.6
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 9.7e-215 750.4 528 78.2
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 1.1e-213 746.9 528 78.2
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.8e-213 746.1 524 76.9
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 1.8e-213 746.1 529 77.1
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.7e-211 739.6 525 76.8
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.7e-211 739.6 524 76.9
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.2e-211 739.2 524 76.9
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 2.9e-211 738.8 532 76.1
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 6.5e-211 737.6 524 76.7
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 2.5e-210 735.7 516 78.1
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 1.8e-208 729.6 458 84.3
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 2.5e-207 725.7 514 76.7
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 6.3e-206 721.1 458 83.8
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 8.2e-206 720.7 528 74.4
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 1.1e-205 720.3 481 80.2
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 2.4e-205 719.2 519 75.9
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 9.1e-205 717.2 450 84.9
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 3.4e-204 715.3 465 82.2
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 1.3e-203 713.4 582 70.6
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.3e-203 713.4 549 72.1
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 1.7e-203 713.0 457 81.6
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 2.2e-203 712.6 457 82.3
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 2.9e-203 712.2 461 82.2
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 5.0e-203 711.4 457 82.5
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 6.5e-203 711.1 459 80.8
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 1.4e-202 709.9 457 82.1
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.4e-202 709.9 458 82.3
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.9e-202 709.5 459 81.9
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 1.9e-202 709.5 457 82.1
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 3.2e-202 708.8 484 78.7
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 3.2e-202 708.8 498 78.1
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 5.5e-202 708.0 458 81.7
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 5.5e-202 708.0 482 78.6
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 7.2e-202 707.6 458 81.9
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 7.2e-202 707.6 458 81.9
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 2.1e-201 706.1 477 80.5
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 2.7e-201 705.7 458 81.7
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 7.9e-201 704.1 458 81.4
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.8e-200 703.0 458 81.2
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 6.7e-200 701.0 460 81.5
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 1.1e-199 700.3 457 81.6
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.5e-199 699.9 516 73.8
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 5.7e-199 698.0 455 80.4
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 9.7e-199 697.2 531 72.9
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 1.3e-198 696.8 496 77.0
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 1.7e-198 696.4 465 80.2
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 2.2e-198 696.0 457 79.9
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 6.3e-198 694.5 488 77.5
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.4e-197 693.3 477 77.8
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 1.4e-197 693.3 451 81.6
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 4.1e-197 691.8 454 81.1
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 5.3e-197 691.4 438 82.0
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 9.1e-197 690.6 532 71.2
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 2.0e-196 689.5 498 76.1
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 4.5e-196 688.3 454 80.4
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 5.9e-196 688.0 461 79.0
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 5.9e-196 688.0 461 79.0
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 7.7e-196 687.6 443 82.2
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 7.7e-196 687.6 443 82.2
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 1.3e-195 686.8 458 80.6
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 1.7e-195 686.4 520 74.2
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 2.9e-195 685.6 532 71.6
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 3.8e-195 685.3 443 82.2
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 8.5e-195 684.1 447 82.1
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 1.1e-194 683.7 462 79.2
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 5.5e-194 681.4 474 76.6
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 7.2e-194 681.0 435 82.3
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 1.6e-193 679.9 431 82.6
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 8.0e-193 677.6 533 70.9
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 3.0e-192 675.6 446 79.4
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 3.9e-192 675.2 461 79.0
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 5.2e-192 674.9 406 86.5
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 6.7e-192 674.5 494 72.5
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 6.7e-192 674.5 437 82.2
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 6.7e-192 674.5 439 80.6
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 3.3e-191 672.2 421 83.1
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 1.3e-190 670.2 532 69.5
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.7e-190 669.8 532 69.7
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 1.4e-189 666.8 443 79.9
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 1.8e-189 666.4 528 70.1
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 1.8e-189 666.4 511 70.8
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 3.1e-189 665.6 528 69.9
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 5.3e-189 664.8 463 77.3
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 3.5e-188 662.1 453 75.5
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 1.0e-187 660.6 430 81.2
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 6.5e-187 657.9 496 72.2
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 8.5e-187 657.5 489 72.8
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 3.2e-186 655.6 456 77.0
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 4.2e-186 655.2 429 81.4
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 7.2e-186 654.4 459 75.4
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 4.7e-185 651.7 457 75.5
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 2.3e-184 649.4 463 75.4
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 4.0e-184 648.7 418 81.3
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 4.0e-184 648.7 467 72.6
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 5.2e-184 648.3 404 83.2
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 6.7e-184 647.9 457 75.5
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 4.8e-182 641.7 439 77.4
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 5.9e-180 634.8 466 72.7
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 1.7e-179 633.3 422 76.5
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.2e-177 627.1 458 72.5
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 4.0e-176 622.1 441 74.4
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 1.7e-174 616.7 430 75.1
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 4.8e-174 615.1 457 71.3
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 1.4e-173 613.6 497 68.6
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 1.8e-173 613.2 495 70.7
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 3.5e-172 609.0 452 71.2
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 3.8e-171 605.5 461 72.5
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 1.8e-165 586.6 532 63.5
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 2.4e-165 586.3 444 71.2
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 6.8e-160 568.2 418 74.4
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 4.9e-158 562.0 456 67.3
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 4.9e-158 562.0 456 67.3
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 4.9e-142 508.8 442 60.2
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 6.6e-139 498.4 510 55.7
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 3.1e-136 489.6 376 72.9
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 2.9e-134 483.0 455 57.6
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 6.6e-131 471.9 379 68.9
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 5.6e-130 468.8 378 68.0
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 7.3e-122 441.8 367 64.0
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 2.5e-109 400.2 230 91.7
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.5e-98 363.6 372 58.1
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 2.5e-98 363.6 421 48.7
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 4.5e-95 352.8 266 71.1
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 1.5e-90 337.8 434 48.8
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 5.0e-78 296.2 445 41.6
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 1.7e-73 281.2 156 100.0
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.7e-73 281.2 386 41.2
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 1.1e-72 278.5 169 88.2
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 3.1e-64 250.4 209 64.1
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 2.0e-63 247.7 397 35.5
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.8e-56 224.6 453 37.1
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 2.4e-56 224.2 442 34.8
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 5.9e-55 219.5 248 54.4
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 1.1e-53 215.3 162 69.1
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.9e-40 171.4 128 64.8
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 7.0e-40 169.5 140 70.0
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.7e-30 138.3 128 60.9
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 5.6e-29 133.3 192 46.4
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 4.9e-25 120.2 81 76.5
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 8.3e-25 119.4 98 70.4
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 7.3e-21 106.3 408 25.7
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 4.4e-18 97.1 97 57.7
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 2.1e-12 78.2 423 24.8
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 7.6e-10 69.7 67 61.2
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 1.3e-09 68.9 355 25.9


User provided reference genes

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