Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 3.0e-80 302.0 175 100.0
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 2.9e-59 232.3 169 78.7
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 2.9e-59 232.3 168 81.0
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 3.2e-58 228.8 168 81.0
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 3.2e-58 228.8 167 77.8
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 2.1e-57 226.1 175 65.1
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 6.1e-57 224.6 175 77.7
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.4e-56 223.4 168 79.2
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 4.0e-56 221.9 169 79.9
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 5.2e-56 221.5 169 77.5
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 5.2e-56 221.5 170 78.2
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 3.4e-55 218.8 168 79.2
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 7.5e-55 217.6 170 77.1
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.7e-54 216.5 166 77.1
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.4e-53 213.4 171 75.4
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 7.0e-53 211.1 165 75.2
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 1.9e-50 203.0 164 74.4
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 2.1e-49 199.5 172 73.8
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 4.7e-49 198.4 168 73.2
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.0e-48 197.2 180 70.6
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 1.4e-48 196.8 166 68.7
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 5.2e-48 194.9 172 70.9
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 5.2e-48 194.9 175 56.0
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.2e-48 194.9 175 56.0
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.2e-48 194.9 175 56.0
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 6.8e-48 194.5 169 69.2
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 8.8e-48 194.1 175 71.4
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 1.2e-47 193.7 240 45.0
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.5e-47 193.4 168 57.7
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.4e-47 191.8 175 55.4
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 5.7e-47 191.4 169 66.9
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 5.7e-47 191.4 174 70.7
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 2.8e-46 189.1 167 68.9
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 3.7e-46 188.7 172 69.8
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 4.9e-46 188.3 175 67.4
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 4.9e-46 188.3 177 67.8
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 6.3e-46 188.0 177 66.1
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 1.1e-45 187.2 177 70.6
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.1e-45 187.2 171 67.3
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.1e-45 187.2 175 54.3
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.4e-45 186.0 172 68.6
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 3.1e-45 185.7 172 69.8
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 4.1e-45 185.3 169 72.2
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 4.1e-45 185.3 170 54.7
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.4e-45 184.9 171 57.9
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 7.0e-45 184.5 169 71.0
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 9.1e-45 184.1 171 57.9
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 9.1e-45 184.1 170 67.1
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.6e-44 183.3 170 67.1
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.6e-44 183.3 170 67.1
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.0e-44 183.0 167 59.3
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 2.7e-44 182.6 167 70.7
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 2.7e-44 182.6 167 70.7
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.7e-44 182.6 167 70.7
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 3.5e-44 182.2 171 55.6
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 3.5e-44 182.2 162 57.4
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 5.9e-44 181.4 172 55.2
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 7.7e-44 181.0 176 68.8
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 7.7e-44 181.0 176 65.9
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 1.0e-43 180.6 173 69.4
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 1.7e-43 179.9 162 70.4
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.7e-43 179.9 172 67.4
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.7e-43 179.9 167 58.7
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 2.3e-43 179.5 165 69.1
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 2.3e-43 179.5 164 67.7
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 2.3e-43 179.5 166 68.1
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 2.3e-43 179.5 173 64.2
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 3.8e-43 178.7 172 66.9
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 3.8e-43 178.7 177 67.8
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.8e-43 178.7 172 67.4
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 3.8e-43 178.7 172 67.4
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 5.0e-43 178.3 166 69.3
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 5.0e-43 178.3 169 56.2
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 6.6e-43 177.9 171 54.4
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 6.6e-43 177.9 172 67.4
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 6.6e-43 177.9 175 65.7
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.5e-42 176.8 171 52.0
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.9e-42 176.4 177 65.5
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.9e-42 176.4 177 65.5
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 5.6e-42 174.9 178 52.8
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 5.6e-42 174.9 162 68.5
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 5.6e-42 174.9 175 66.3
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 9.5e-42 174.1 164 70.7
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 9.5e-42 174.1 164 70.7
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 9.5e-42 174.1 177 68.4
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 2.8e-41 172.6 168 69.6
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 4.7e-41 171.8 172 68.6
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.0e-40 170.6 171 63.7
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 2.3e-40 169.5 165 66.1
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 2.3e-40 169.5 165 66.7
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 4.0e-40 168.7 157 66.2
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 6.8e-40 167.9 166 60.8
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 1.2e-39 167.2 162 63.6
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 1.2e-39 167.2 175 65.1
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 2.0e-39 166.4 166 61.4
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 2.6e-39 166.0 146 71.2
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 3.4e-39 165.6 175 64.6
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 7.5e-39 164.5 170 62.4
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 2.9e-38 162.5 156 67.9
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 2.9e-38 162.5 156 67.9
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 3.7e-38 162.2 175 63.4
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 8.3e-38 161.0 171 60.8
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 8.3e-38 161.0 169 49.1
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 1.8e-37 159.8 168 64.3
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.8e-37 159.8 170 61.2
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.4e-37 159.5 143 68.5
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.2e-37 159.1 170 59.4
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 3.2e-37 159.1 164 64.0
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 5.4e-37 158.3 171 60.8
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 9.2e-37 157.5 172 58.1
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 9.2e-37 157.5 170 59.4
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 9.2e-37 157.5 171 59.1
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.2e-36 157.1 171 49.1
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.2e-36 157.1 162 59.3
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 2.7e-36 156.0 164 50.0
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 4.6e-36 155.2 160 53.8
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 1.3e-35 153.7 170 62.9
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 1.3e-35 153.7 166 62.0
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 2.9e-35 152.5 163 50.3
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.1e-34 150.6 173 60.7
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 7.3e-34 147.9 161 65.2
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 1.2e-33 147.1 159 62.3
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 8.0e-33 144.4 176 58.5
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 1.0e-32 144.1 177 58.8
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.0e-32 144.1 145 57.9
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 1.8e-32 143.3 178 59.0
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.8e-32 143.3 177 59.3
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 2.3e-32 142.9 178 59.6
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 3.1e-32 142.5 178 59.0
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 3.1e-32 142.5 178 59.0
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 4.0e-32 142.1 176 59.1
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 8.9e-32 141.0 176 59.1
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 8.9e-32 141.0 78 79.5
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 3.4e-31 139.0 162 60.5
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 7.5e-31 137.9 179 57.5
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 4.9e-30 135.2 108 55.6
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.0e-27 127.5 143 62.2
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 1.3e-27 127.1 78 74.4
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 6.6e-27 124.8 155 61.3
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 3.1e-24 115.9 129 47.3
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.4e-23 112.5 115 67.0
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 6.4e-22 108.2 99 79.8
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 9.2e-21 104.4 66 69.7
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 1.2e-20 104.0 323 27.2
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 3.5e-20 102.4 121 44.6
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 4.6e-20 102.1 126 43.7
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 6.0e-20 101.7 99 76.8
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.9e-18 96.7 152 38.2
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 5.2e-16 88.6 111 40.5
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 1.3e-14 84.0 64 62.5


User provided reference genes

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