Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 1.1e-40 169.5 84 100.0
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 6.6e-25 117.1 97 68.0
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 3.6e-23 111.3 105 61.0
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 9.9e-21 103.2 104 57.7
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 3.5e-18 94.7 90 64.4
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 1.3e-17 92.8 90 63.3
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 1.7e-17 92.4 89 61.8
RcHm_v2.0_Chr1g0381731 Rosa chinensis HOM05D003086 ORTHO05D003347 1.5e-16 89.4 98 58.2
FAN03G2739 Fragaria x ananassa HOM05D002608 ORTHO05D013420 9.5e-16 86.7 99 55.6
FAN10G1862 Fragaria x ananassa HOM05D037066 ORTHO05D003347 1.2e-15 86.3 99 55.6
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 8.1e-15 83.6 91 57.1
FAN01G2353 Fragaria x ananassa HOM05D037066 ORTHO05D003347 1.1e-14 83.2 99 53.5
FAN10G1789 Fragaria x ananassa HOM05D037066 ORTHO05D003347 1.2e-13 79.7 99 53.5
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 3.4e-13 78.2 86 53.5
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 4.4e-13 77.8 84 58.3
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 4.4e-13 77.8 84 57.1
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.2e-12 75.5 89 53.9
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 3.8e-12 74.7 68 61.8
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.9e-12 74.3 93 50.5
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 4.9e-12 74.3 93 51.6
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 4.9e-12 74.3 84 52.4
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 6.4e-12 73.9 92 51.1
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 6.4e-12 73.9 58 67.2
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 8.4e-12 73.6 84 53.6
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 8.4e-12 73.6 62 62.9
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.9e-11 72.4 69 59.4
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 1.9e-11 72.4 72 54.2
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 2.4e-11 72.0 68 57.4
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.4e-11 72.0 62 62.9
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.2e-11 71.6 63 60.3
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 4.1e-11 71.2 84 48.8
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 4.1e-11 71.2 62 62.9
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 5.4e-11 70.9 70 58.6
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 5.4e-11 70.9 74 54.1
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 7.1e-11 70.5 94 48.9
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 7.1e-11 70.5 84 47.6
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 9.2e-11 70.1 62 64.5
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 9.2e-11 70.1 63 61.9
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 9.2e-11 70.1 63 61.9
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 9.2e-11 70.1 55 67.3
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.2e-10 69.7 60 61.7
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.2e-10 69.7 68 58.8
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.6e-10 69.3 82 54.9
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.6e-10 69.3 63 60.3
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 2.1e-10 68.9 60 61.7
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.1e-10 68.9 53 67.9
Gohir.A09G186001 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.1e-10 68.9 78 50.0
Gohir.D09G180500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.1e-10 68.9 78 50.0
Gorai.006G202500 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.1e-10 68.9 78 50.0
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 2.1e-10 68.9 85 51.8
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 2.1e-10 68.9 55 63.6
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 2.7e-10 68.6 62 62.9
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 2.7e-10 68.6 56 64.3
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 2.7e-10 68.6 87 54.0
Gorai.007G015800 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.5e-10 68.2 73 52.1
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 3.5e-10 68.2 62 61.3
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 3.5e-10 68.2 55 65.5
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 4.6e-10 67.8 55 63.6
Gohir.D11G015350 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.6e-10 67.8 72 51.4
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 6.0e-10 67.4 62 59.7
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 6.0e-10 67.4 75 52.0
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 6.0e-10 67.4 62 61.3
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 7.8e-10 67.0 64 62.5
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 7.8e-10 67.0 69 56.5
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.0e-09 66.6 85 49.4
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.0e-09 66.6 53 67.9
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 1.0e-09 66.6 56 66.1
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 1.7e-09 65.9 62 58.1
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 1.7e-09 65.9 57 57.9
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 3.0e-09 65.1 63 61.9
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 3.0e-09 65.1 59 59.3
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 3.9e-09 64.7 60 58.3
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 3.9e-09 64.7 66 54.5
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 5.1e-09 64.3 57 57.9
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 5.1e-09 64.3 85 47.1
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 6.6e-09 63.9 60 56.7
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 6.6e-09 63.9 60 56.7
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 6.6e-09 63.9 60 56.7
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 6.6e-09 63.9 84 47.6
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 8.7e-09 63.5 63 55.6
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 8.7e-09 63.5 68 54.4
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 8.7e-09 63.5 75 49.3
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 8.7e-09 63.5 62 56.5
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 1.1e-08 63.2 58 58.6
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 1.1e-08 63.2 58 56.9
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.1e-08 63.2 56 62.5
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.1e-08 63.2 82 47.6
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.1e-08 63.2 81 48.1
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 1.5e-08 62.8 69 52.2
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.5e-08 62.8 60 56.7
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.9e-08 62.4 57 57.9
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 1.9e-08 62.4 84 47.6
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 2.5e-08 62.0 62 54.8
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 2.5e-08 62.0 62 54.8
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 2.5e-08 62.0 62 54.8
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 2.5e-08 62.0 62 54.8
Gohir.A11G015250 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.3e-08 61.6 73 49.3
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 3.3e-08 61.6 84 45.2
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 3.3e-08 61.6 84 45.2
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 3.3e-08 61.6 57 57.9
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 4.3e-08 61.2 63 55.6
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 4.3e-08 61.2 55 60.0
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 5.6e-08 60.8 75 45.3
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 5.6e-08 60.8 58 55.2
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 5.6e-08 60.8 74 51.4
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 7.3e-08 60.5 62 54.8
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 7.3e-08 60.5 75 48.0
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 7.3e-08 60.5 86 48.8
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 7.3e-08 60.5 55 58.2
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 9.6e-08 60.1 63 57.1
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 9.6e-08 60.1 75 49.3
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 9.6e-08 60.1 55 56.4
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 9.6e-08 60.1 65 50.8
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 9.6e-08 60.1 57 61.4
A03p54930 Brassica napus HOM05D003086 ORTHO05D003347 1.2e-07 59.7 60 51.7
BraA03t14558Z Brassica rapa HOM05D003086 ORTHO05D003347 1.2e-07 59.7 60 51.7
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 1.2e-07 59.7 56 57.1
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 1.2e-07 59.7 55 60.0
Sopen05g028970 Solanum pennellii HOM05D003086 ORTHO05D003347 1.2e-07 59.7 69 44.9
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 2.1e-07 58.9 62 53.2
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 2.1e-07 58.9 55 52.7
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 2.1e-07 58.9 62 53.2
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 2.1e-07 58.9 37 75.7
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 2.1e-07 58.9 67 53.7
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 2.8e-07 58.5 66 51.5
Ca_16727_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 2.8e-07 58.5 46 63.0
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 2.8e-07 58.5 65 47.7
Prupe.2G191800 Prunus persica HOM05D014299 ORTHO05D017012 2.8e-07 58.5 67 49.3
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 3.6e-07 58.2 74 47.3
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 4.7e-07 57.8 62 48.4
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 4.7e-07 57.8 62 48.4
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 4.7e-07 57.8 62 48.4
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 4.7e-07 57.8 62 48.4
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 4.7e-07 57.8 62 48.4
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 4.7e-07 57.8 62 48.4
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 4.7e-07 57.8 85 44.7
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 4.7e-07 57.8 54 59.3
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 6.2e-07 57.4 63 54.0
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 6.2e-07 57.4 63 54.0
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 8.1e-07 57.0 66 53.0
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 8.1e-07 57.0 54 55.6
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 8.1e-07 57.0 81 44.4
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 1.1e-06 56.6 60 51.7
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 1.1e-06 56.6 62 51.6
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.1e-06 56.6 86 46.5
AUR62006063 Chenopodium quinoa HOM05D003086 ORTHO05D003347 1.1e-06 56.6 79 46.8
AUR62035564 Chenopodium quinoa HOM05D003086 ORTHO05D003347 1.1e-06 56.6 79 46.8
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.4e-06 56.2 60 53.3
Medtr3g491900 Medicago truncatula HOM05D003086 ORTHO05D003347 1.4e-06 56.2 59 52.5
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.4e-06 56.2 66 51.5
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.4e-06 56.2 63 49.2
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 2.4e-06 55.5 62 50.0
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 2.4e-06 55.5 62 50.0
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 2.4e-06 55.5 73 42.5
Lsat_1_v5_gn_7_3900 Lactuca sativa HOM05D055552 ORTHO05D045220 2.4e-06 55.5 83 42.2
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 2.4e-06 55.5 77 48.1
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 2.4e-06 55.5 54 53.7
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 2.4e-06 55.5 54 53.7
DCAR_003769 Daucus carota HOM05D003086 ORTHO05D003347 3.1e-06 55.1 74 43.2
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.1e-06 55.1 53 58.5
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 4.0e-06 54.7 62 45.2
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 4.0e-06 54.7 85 42.4
ECA247G0789 Erigeron canadensis HOM05D007433 ORTHO05D009199 5.2e-06 54.3 58 48.3
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 5.2e-06 54.3 75 44.0
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.2e-06 54.3 53 58.5
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.2e-06 54.3 53 58.5
Psat4g005000 Pisum sativum HOM05D003086 ORTHO05D003347 5.2e-06 54.3 46 58.7
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 5.2e-06 54.3 52 53.8
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 6.9e-06 53.9 57 50.9
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 6.9e-06 53.9 57 50.9
Lj1g0020347 Lotus japonicus HOM05D003086 ORTHO05D003347 6.9e-06 53.9 79 44.3
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 6.9e-06 53.9 75 44.0
Lsat_1_v5_gn_1_480 Lactuca sativa HOM05D007433 ORTHO05D009199 9.0e-06 53.5 58 46.6
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 9.0e-06 53.5 84 40.5
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 9.0e-06 53.5 53 54.7


User provided reference genes

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