Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 1.2e-61 239.6 117 100.0
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 1.2e-56 223.0 116 93.1
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 3.5e-56 221.5 114 91.2
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 3.5e-56 221.5 117 90.6
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 4.5e-56 221.1 114 91.2
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.7e-55 219.2 116 90.5
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 3.8e-55 218.0 117 86.3
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 8.5e-55 216.9 116 90.5
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.9e-54 215.7 114 90.4
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 2.5e-54 215.3 116 88.8
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 4.2e-54 214.5 116 88.8
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.2e-54 214.5 116 88.8
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 5.5e-54 214.2 117 86.3
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 7.2e-54 213.8 112 89.3
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 1.2e-53 213.0 117 87.2
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.2e-53 213.0 113 87.6
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.6e-53 212.6 114 89.5
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 1.6e-53 212.6 116 87.1
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 2.1e-53 212.2 116 87.9
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 2.1e-53 212.2 113 88.5
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 2.1e-53 212.2 116 87.1
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 2.7e-53 211.8 114 86.8
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 2.7e-53 211.8 113 86.7
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 3.6e-53 211.5 113 86.7
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 3.6e-53 211.5 117 85.5
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 3.6e-53 211.5 117 85.5
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 3.6e-53 211.5 117 85.5
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.7e-53 211.1 116 87.1
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 4.7e-53 211.1 116 86.2
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 6.1e-53 210.7 114 86.8
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 1.4e-52 209.5 117 89.7
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 1.4e-52 209.5 117 89.7
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.4e-52 209.5 116 87.1
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 1.4e-52 209.5 117 85.5
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 2.3e-52 208.8 117 89.7
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 2.3e-52 208.8 114 86.8
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 2.3e-52 208.8 114 86.8
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 2.3e-52 208.8 114 86.8
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 3.0e-52 208.4 114 86.0
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 3.0e-52 208.4 118 86.4
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 4.0e-52 208.0 116 85.3
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 5.2e-52 207.6 114 86.0
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 5.2e-52 207.6 116 83.6
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 6.7e-52 207.2 114 85.1
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 8.8e-52 206.8 114 85.1
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.2e-51 206.5 116 83.6
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 1.5e-51 206.1 116 82.8
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 1.5e-51 206.1 113 84.1
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.5e-51 206.1 115 86.1
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 2.0e-51 205.7 114 85.1
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 2.6e-51 205.3 115 85.2
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 2.6e-51 205.3 115 87.8
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 3.3e-51 204.9 115 85.2
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 3.3e-51 204.9 114 84.2
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 5.7e-51 204.1 127 80.3
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 7.5e-51 203.8 113 82.3
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 7.5e-51 203.8 117 80.3
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 7.5e-51 203.8 115 84.3
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.2e-50 202.2 115 83.5
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 2.2e-50 202.2 115 85.2
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 2.8e-50 201.8 116 83.6
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 6.3e-50 200.7 115 85.2
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 8.2e-50 200.3 119 83.2
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 8.2e-50 200.3 119 83.2
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 1.1e-49 199.9 112 83.9
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.4e-49 199.5 115 82.6
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.4e-49 199.5 116 82.8
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.4e-49 199.5 116 81.0
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.4e-49 199.5 120 78.3
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 3.1e-49 198.4 114 83.3
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 5.3e-49 197.6 112 83.9
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 7.0e-49 197.2 113 81.4
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 7.0e-49 197.2 114 83.3
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 9.1e-49 196.8 114 83.3
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 9.1e-49 196.8 113 81.4
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 1.2e-48 196.4 113 83.2
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.6e-48 196.1 119 82.4
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 1.6e-48 196.1 113 81.4
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 2.0e-48 195.7 116 81.0
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 2.7e-48 195.3 113 80.5
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 2.7e-48 195.3 113 80.5
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 2.7e-48 195.3 113 80.5
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 2.7e-48 195.3 113 80.5
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 5.9e-48 194.1 113 80.5
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 5.9e-48 194.1 116 80.2
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 7.7e-48 193.7 113 79.6
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 7.7e-48 193.7 113 79.6
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 1.0e-47 193.4 113 79.6
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 1.0e-47 193.4 113 79.6
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 1.0e-47 193.4 113 79.6
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.0e-47 193.4 118 78.8
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.3e-47 193.0 117 79.5
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.3e-47 193.0 117 79.5
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.3e-47 193.0 117 79.5
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.3e-47 193.0 117 79.5
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.3e-47 193.0 117 79.5
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 2.2e-47 192.2 114 81.6
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 2.2e-47 192.2 113 78.8
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 2.2e-47 192.2 113 78.8
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 2.2e-47 192.2 113 79.6
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 5.0e-47 191.0 117 76.9
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 6.5e-47 190.7 117 78.6
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.5e-46 189.5 113 77.9
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 1.5e-46 189.5 116 77.6
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 2.5e-46 188.7 167 61.1
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 4.2e-46 188.0 117 79.5
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 5.5e-46 187.6 125 72.8
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 7.2e-46 187.2 113 77.9
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 9.4e-46 186.8 115 73.9
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 9.4e-46 186.8 115 73.9
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.6e-45 186.0 117 78.6
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 2.1e-45 185.7 114 78.1
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 6.1e-45 184.1 115 74.8
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 1.2e-43 179.9 115 76.5
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.2e-43 179.9 114 73.7
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 1.5e-43 179.5 117 77.8
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 5.7e-43 177.6 117 74.4
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 7.5e-43 177.2 98 85.7
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 7.5e-43 177.2 98 85.7
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 2.8e-42 175.3 99 84.8
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 4.8e-42 174.5 129 67.4
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 4.8e-42 174.5 97 85.6
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.3e-42 174.1 97 84.5
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 5.4e-41 171.0 96 85.4
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 7.7e-40 167.2 100 81.0
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 2.3e-39 165.6 119 73.1
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 6.6e-39 164.1 121 69.4
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.7e-37 157.9 97 79.4
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.4e-36 156.4 101 72.3
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 6.8e-36 154.1 114 62.3
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 1.5e-35 152.9 98 73.5
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.7e-34 149.4 112 60.7
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 2.2e-34 149.1 109 61.5
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 1.8e-33 146.0 100 72.0
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 7.8e-32 140.6 95 72.6
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 9.5e-30 133.7 115 55.7
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 3.5e-24 115.2 116 52.6
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 4.6e-24 114.8 63 87.3
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 6.0e-24 114.4 77 70.1
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 8.6e-23 110.5 63 85.7
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.5e-22 109.8 63 81.0
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 1.5e-22 109.8 60 85.0
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.9e-22 109.4 57 91.2
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 3.3e-22 108.6 52 96.2
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 5.6e-22 107.8 57 91.2
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 5.6e-22 107.8 68 79.4
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 5.6e-22 107.8 158 43.0
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 2.1e-21 105.9 61 83.6
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 6.2e-21 104.4 56 85.7
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 8.0e-21 104.0 60 83.3
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.4e-20 103.2 75 69.3
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 2.3e-20 102.4 50 92.0
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 3.1e-20 102.1 51 88.2
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 4.0e-20 101.7 53 86.8
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.2e-19 100.1 52 86.5
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 4.1e-17 91.7 134 39.6
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.3e-15 86.7 137 37.2
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 3.6e-13 78.6 53 75.5
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 2.6e-11 72.4 69 55.1
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 1.1e-09 67.0 100 48.0
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 2.7e-08 62.4 35 85.7
Atru.chr9.2072 Acer truncatum HOM05D001461 ORTHO05D005534 6.6e-07 57.8 115 35.7


User provided reference genes

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