Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 8.1e-120 433.7 215 100.0
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 3.4e-65 252.3 207 63.8
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 1.7e-64 250.0 207 64.3
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 7.0e-63 244.6 210 62.4
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 2.7e-62 242.7 207 62.8
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 1.9e-60 236.5 206 62.1
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 3.0e-58 229.2 207 60.9
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 6.8e-58 228.0 217 60.4
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.2e-56 223.0 207 58.0
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 3.7e-56 222.2 207 58.0
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.4e-56 221.5 207 58.0
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.3e-56 221.1 207 58.0
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 7.0e-55 218.0 206 58.3
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 1.0e-53 214.2 213 57.3
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 5.0e-53 211.8 216 57.4
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 5.0e-53 211.8 209 55.5
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 8.6e-53 211.1 214 56.5
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 1.1e-52 210.7 216 56.9
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 2.5e-52 209.5 214 56.1
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 2.5e-52 209.5 216 56.9
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 4.3e-52 208.8 207 55.6
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 4.3e-52 208.8 207 55.6
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 5.6e-52 208.4 198 59.6
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 5.6e-52 208.4 214 55.6
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 9.5e-52 207.6 219 56.6
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 1.2e-51 207.2 215 56.7
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 2.8e-51 206.1 208 57.7
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 4.7e-51 205.3 205 54.1
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 4.7e-51 205.3 218 54.6
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 1.5e-49 200.3 195 60.0
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 1.5e-49 200.3 208 52.9
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 5.8e-49 198.4 213 53.5
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 9.8e-49 197.6 223 52.9
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 1.7e-48 196.8 212 56.6
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 3.7e-48 195.7 197 54.8
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 1.1e-47 194.1 208 54.3
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 2.4e-47 193.0 222 52.3
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 4.1e-47 192.2 221 50.7
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 4.1e-47 192.2 193 54.9
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 5.4e-47 191.8 192 52.6
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 2.7e-46 189.5 212 56.6
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 3.5e-46 189.1 183 59.6
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 3.5e-46 189.1 197 52.3
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 1.0e-45 187.6 183 55.7
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 1.0e-45 187.6 196 51.5
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 1.7e-45 186.8 235 47.2
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 3.9e-45 185.7 206 51.5
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 5.0e-45 185.3 210 51.4
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 6.6e-45 184.9 178 56.2
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 8.6e-45 184.5 198 52.5
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 8.6e-45 184.5 196 51.0
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 1.1e-44 184.1 157 58.0
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 1.5e-44 183.7 222 51.4
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 3.3e-44 182.6 193 51.3
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 9.5e-44 181.0 222 51.4
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.1e-43 179.9 198 49.5
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 2.8e-43 179.5 186 52.7
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 2.8e-43 179.5 202 48.0
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 8.1e-43 177.9 168 57.7
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 8.1e-43 177.9 198 49.0
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 3.4e-41 172.6 213 48.8
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 5.8e-41 171.8 256 43.8
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 1.7e-40 170.2 162 58.0
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 6.4e-40 168.3 208 47.6
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 8.3e-40 167.9 155 56.8
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.4e-39 167.2 164 53.7
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 2.1e-38 163.3 208 47.1
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 2.1e-38 163.3 220 49.1
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 7.8e-38 161.4 221 46.6
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 1.0e-37 161.0 136 60.3
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 1.7e-37 160.2 225 48.4
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 2.3e-37 159.8 184 48.9
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 5.1e-37 158.7 212 46.7
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 8.6e-37 157.9 166 54.8
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 1.5e-36 157.1 191 49.2
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 3.3e-36 156.0 216 48.1
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 4.3e-36 155.6 226 45.1
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 4.3e-36 155.6 226 45.1
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 4.3e-36 155.6 226 45.1
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 1.2e-35 154.1 226 44.7
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 1.6e-35 153.7 218 45.9
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 2.1e-35 153.3 241 41.1
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 3.6e-35 152.5 216 46.3
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 3.6e-35 152.5 218 46.3
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 1.4e-34 150.6 172 47.7
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 1.4e-34 150.6 172 47.7
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 4.0e-34 149.1 223 43.9
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 5.2e-34 148.7 210 50.0
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 3.8e-32 142.5 188 45.2
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.1e-31 141.0 164 47.0
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 1.4e-31 140.6 224 43.3
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 1.4e-31 140.6 224 43.3
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 1.4e-31 140.6 216 42.6
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 3.2e-31 139.4 216 42.6
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 3.2e-31 139.4 219 42.9
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 4.1e-31 139.0 164 46.3
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 9.2e-31 137.9 212 42.9
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 1.3e-29 134.0 212 43.4
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 1.3e-29 134.0 166 50.6
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 1.3e-29 134.0 94 69.1
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 2.3e-29 133.3 218 42.2
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 3.9e-29 132.5 171 49.7
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 8.6e-29 131.3 199 44.2
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 1.9e-28 130.2 216 41.2
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 2.5e-28 129.8 114 56.1
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 2.5e-28 129.8 114 56.1
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 2.5e-28 129.8 114 56.1
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 5.6e-28 128.6 169 43.2
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 1.2e-27 127.5 94 63.8
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 3.6e-27 125.9 84 67.9
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 1.4e-26 124.0 84 66.7
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 2.0e-25 120.2 192 42.7
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 7.6e-25 118.2 103 56.3
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 3.8e-24 115.9 207 40.6
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 1.9e-23 113.6 100 57.0
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 1.1e-20 104.4 157 42.0
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 1.8e-18 97.1 91 54.9
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 1.3e-16 90.9 87 51.7
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 1.3e-16 90.9 87 51.7
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 3.8e-16 89.4 106 50.0
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.9e-15 87.0 69 66.7
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 9.3e-15 84.7 59 66.1
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 1.6e-14 84.0 58 67.2
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 3.3e-12 76.3 229 32.3
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 9.0e-10 68.2 36 72.2
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 2.6e-09 66.6 53 47.2
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 5.8e-09 65.5 45 60.0
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 7.6e-09 65.1 134 30.6
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 3.8e-08 62.8 104 35.6
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 6.4e-08 62.0 218 32.6
FAN22G1271 Fragaria x ananassa HOM05D038641 ORTHO05D035590 1.1e-07 61.2 65 50.8
Glyma.09G185300 Glycine max HOM05D005829 ORTHO05D007246 3.2e-07 59.7 234 28.6


User provided reference genes

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