Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 1.8e-218 762.3 392 100.0
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 9.4e-215 750.0 392 97.4
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 1.2e-132 477.2 392 64.8
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 2.2e-131 473.0 390 64.9
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 2.9e-131 472.6 392 64.3
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 8.4e-131 471.1 391 65.2
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 8.4e-131 471.1 320 74.1
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 3.2e-130 469.2 368 66.8
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 1.6e-129 466.8 371 66.3
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 2.7e-129 466.1 325 70.2
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 1.0e-128 464.2 389 64.5
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 2.3e-128 463.0 309 73.5
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 3.0e-128 462.6 309 74.8
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 3.0e-128 462.6 309 74.8
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 3.9e-128 462.2 357 66.9
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 3.9e-128 462.2 324 70.1
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 5.1e-128 461.8 352 66.5
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 7.4e-127 458.0 374 64.2
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 1.3e-126 457.2 383 65.3
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 1.6e-126 456.8 394 62.9
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.1e-126 456.4 306 72.5
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 2.1e-126 456.4 392 63.8
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 2.8e-126 456.1 310 73.5
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 4.8e-126 455.3 383 62.9
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 4.8e-126 455.3 352 65.3
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 1.1e-125 454.1 368 65.2
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 2.4e-125 453.0 311 72.3
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 3.1e-125 452.6 376 62.8
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 9.0e-125 451.1 312 72.4
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 1.2e-124 450.7 309 70.9
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 3.4e-124 449.1 317 70.0
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 4.5e-124 448.7 387 62.0
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 5.8e-124 448.4 316 71.8
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 5.8e-124 448.4 360 63.3
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 5.8e-124 448.4 379 60.7
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 6.4e-123 444.9 304 72.4
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 8.4e-123 444.5 369 63.7
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.1e-122 444.1 369 62.6
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 1.2e-121 440.7 352 64.8
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 2.1e-121 439.9 316 69.0
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 3.5e-121 439.1 386 61.4
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 1.0e-120 437.6 441 55.1
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 6.7e-120 434.9 326 69.3
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 8.7e-120 434.5 315 68.3
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 4.0e-117 425.6 305 67.5
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 5.3e-117 425.2 310 68.7
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 6.9e-117 424.9 310 68.1
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 6.9e-117 424.9 309 68.9
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 9.0e-117 424.5 310 68.4
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 1.2e-116 424.1 310 68.4
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 2.0e-116 423.3 310 67.7
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 2.0e-116 423.3 310 67.7
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 2.0e-116 423.3 310 68.4
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 3.4e-116 422.5 310 67.7
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 4.5e-116 422.2 310 67.7
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 1.0e-115 421.0 310 67.7
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 3.2e-114 416.0 381 60.9
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 4.2e-114 415.6 332 63.3
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 5.5e-114 415.2 314 64.3
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 9.3e-114 414.5 319 64.6
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 1.2e-113 414.1 310 66.5
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 1.2e-113 414.1 379 56.7
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 1.2e-113 414.1 328 64.3
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 1.6e-113 413.7 334 64.1
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 1.6e-113 413.7 343 63.0
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 1.6e-113 413.7 343 63.0
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 2.1e-113 413.3 321 65.4
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 2.1e-113 413.3 298 68.8
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 1.3e-112 410.6 309 65.4
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 2.3e-112 409.8 357 58.8
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 1.5e-111 407.1 389 57.1
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 1.9e-111 406.8 327 63.6
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 7.4e-111 404.8 318 64.2
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 1.6e-110 403.7 304 65.5
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 1.6e-110 403.7 389 58.6
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 3.8e-107 392.5 311 65.6
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 5.5e-106 388.7 287 67.2
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 5.5e-106 388.7 331 62.5
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 4.6e-105 385.6 267 71.5
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 7.9e-105 384.8 314 62.7
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 1.3e-104 384.0 303 64.4
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 2.3e-104 383.3 341 59.2
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 3.9e-104 382.5 310 61.9
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 5.1e-104 382.1 379 56.7
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 5.1e-104 382.1 316 59.8
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 1.9e-103 380.2 386 55.7
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 1.1e-101 374.4 357 57.1
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 2.4e-101 373.2 379 57.0
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 9.1e-101 371.3 302 60.3
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 2.2e-99 366.7 273 65.9
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 4.2e-98 362.5 310 59.4
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 4.4e-95 352.4 278 64.4
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 1.4e-93 347.4 285 62.1
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 6.1e-89 332.0 335 54.3
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 1.1e-87 327.8 285 60.0
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 2.6e-87 326.6 486 44.0
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.6e-87 326.6 327 57.5
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 2.2e-86 323.6 328 54.6
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 4.8e-86 322.4 226 69.5
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 6.3e-86 322.0 297 54.2
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 6.3e-78 295.4 331 47.1
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 1.8e-77 293.9 268 57.5
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 3.8e-75 286.2 314 47.1
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 4.0e-72 276.2 305 46.6
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 5.9e-68 262.3 303 44.9
Manes.15G185701 Manihot esculenta HOM05D006137 ORTHO05D007697 2.3e-64 250.4 204 66.7
Ca_25185_v3 Cicer arietinum L. HOM05D006137 ORTHO05D007697 4.0e-64 249.6 223 58.7
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 1.6e-60 237.7 159 77.4
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.3e-56 223.8 198 60.1
Oeu033557.2 Olea europaea HOM05D006137 ORTHO05D007697 9.8e-47 191.8 149 61.7
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 7.0e-45 185.7 161 62.7
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 1.6e-44 184.5 170 60.6
AUR62002645 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.1e-42 178.3 185 53.0
AUR62040998 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.2e-41 174.9 136 62.5
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 1.4e-40 171.4 161 58.4
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 8.9e-40 168.7 161 57.8
Hund09821 Selenicereus undatus HOM05D006137 ORTHO05D000006 1.1e-34 151.8 140 52.9
Glyma.07G152633 Glycine max HOM05D006137 ORTHO05D007697 2.5e-34 150.6 112 67.9
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 3.1e-32 143.7 184 44.6
MCO11G470 Micromonas commoda HOM05D006137 ORTHO05D007697 3.4e-31 140.2 199 35.2
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 5.4e-29 132.9 95 72.6
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 1.4e-24 118.2 127 50.4
PRCOL_00002339 Prasinoderma coloniale HOM05D006137 ORTHO05D007697 9.0e-24 115.5 204 32.8
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 1.9e-10 71.2 36 83.3
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 1.9e-10 71.2 36 83.3
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 1.1e-08 65.5 31 83.9
MCO12G135 Micromonas commoda HOM05D002058 ORTHO05D003758 4.0e-08 63.5 112 31.2
SEGI_36463 Sequoiadendron giganteum HOM05D002058 ORTHO05D009216 4.0e-08 63.5 122 33.6
BcaC09g50780 Brassica carinata HOM05D006137 ORTHO05D007697 2.6e-07 60.8 98 45.9
Mapoly0089s0033 Marchantia polymorpha HOM05D002058 ORTHO05D003758 3.4e-07 60.5 178 29.2
Cre16.g659850 Chlamydomonas reinhardtii HOM05D006137 ORTHO05D007697 1.3e-06 58.5 214 23.8


User provided reference genes

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