Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 5.9e-167 590.9 320 100.0
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 3.1e-107 392.5 321 65.4
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 4.2e-104 382.1 315 63.2
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 5.5e-104 381.7 315 63.2
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 5.5e-104 381.7 315 66.0
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 7.1e-104 381.3 315 63.2
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 2.1e-103 379.8 315 62.9
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 2.1e-103 379.8 315 62.9
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 2.7e-103 379.4 317 66.2
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 7.9e-103 377.9 315 64.1
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 7.9e-103 377.9 315 62.9
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 7.9e-103 377.9 311 63.7
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.0e-102 375.9 315 63.2
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 1.1e-101 374.0 313 66.8
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 2.5e-101 372.9 313 63.6
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 1.3e-100 370.5 320 62.2
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 4.1e-99 365.5 313 62.9
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 6.9e-99 364.8 313 62.6
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 3.4e-98 362.5 315 61.3
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 5.0e-97 358.6 326 61.3
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 4.2e-96 355.5 312 60.9
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 5.5e-96 355.1 319 59.2
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 7.2e-96 354.8 317 61.5
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 1.2e-95 354.0 313 60.1
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 1.6e-95 353.6 317 61.2
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 2.7e-95 352.8 313 61.7
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 4.6e-95 352.1 312 60.6
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 7.9e-95 351.3 316 60.4
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 1.8e-94 350.1 313 62.3
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 2.3e-94 349.7 316 60.4
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 8.7e-94 347.8 313 59.1
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 2.5e-93 346.3 350 54.9
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 3.3e-93 345.9 312 59.6
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 4.3e-93 345.5 312 58.7
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 7.4e-93 344.7 258 69.0
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 9.7e-93 344.4 313 58.1
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 1.6e-92 343.6 324 58.3
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 2.8e-92 342.8 318 60.4
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 1.1e-91 340.9 315 59.7
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 1.8e-91 340.1 313 59.1
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 1.8e-91 340.1 313 58.1
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 2.4e-91 339.7 315 60.3
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 5.3e-91 338.6 313 57.8
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 5.3e-91 338.6 317 58.0
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 2.0e-90 336.7 314 58.9
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 7.7e-90 334.7 313 58.1
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 7.7e-90 334.7 313 58.1
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 1.0e-89 334.3 313 55.9
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 2.9e-89 332.8 324 57.1
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 2.9e-89 332.8 324 57.1
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 6.5e-89 331.6 322 57.5
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 6.5e-89 331.6 323 57.6
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 6.5e-89 331.6 323 57.6
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 6.5e-89 331.6 314 54.8
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 8.5e-89 331.3 317 54.9
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 1.1e-88 330.9 324 56.5
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 1.1e-88 330.9 313 55.9
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 1.9e-88 330.1 320 56.6
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 1.9e-88 330.1 324 56.8
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 4.2e-88 328.9 323 55.7
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 4.2e-88 328.9 313 56.5
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 5.5e-88 328.6 319 57.1
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 7.2e-88 328.2 271 62.4
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 7.2e-88 328.2 271 62.0
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 1.2e-87 327.4 319 59.2
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 4.6e-87 325.5 316 57.9
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.4e-86 323.9 270 64.8
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 1.8e-86 323.6 313 55.9
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 3.0e-86 322.8 321 57.0
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 8.8e-86 321.2 312 57.4
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 2.0e-85 320.1 324 54.6
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 2.6e-85 319.7 316 56.6
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 9.7e-85 317.8 316 54.4
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 1.7e-84 317.0 271 61.3
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 3.1e-83 312.8 312 55.1
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 5.3e-83 312.0 320 56.9
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 5.3e-83 312.0 313 57.8
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 1.0e-81 307.8 317 55.8
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 1.7e-81 307.0 304 55.3
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 1.4e-80 303.9 313 61.3
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 2.5e-80 303.1 313 52.4
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 2.5e-80 303.1 267 58.4
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 1.2e-79 300.8 313 52.7
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 3.9e-78 295.8 313 54.0
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 3.9e-78 295.8 317 55.5
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 9.7e-77 291.2 313 51.4
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 4.8e-76 288.9 267 56.6
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 3.1e-75 286.2 316 53.8
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.6e-74 283.9 262 56.1
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 2.0e-74 283.5 316 53.2
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 5.9e-74 282.0 261 58.2
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.8e-73 279.3 207 69.1
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 5.0e-73 278.9 314 52.9
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 4.2e-72 275.8 313 52.1
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 1.2e-69 267.7 272 55.5
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 8.2e-68 261.5 312 49.0
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 3.1e-67 259.6 205 65.4
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 5.9e-66 255.4 330 48.2
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 9.4e-64 248.1 176 72.7
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 6.1e-63 245.4 327 45.9
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 8.0e-63 245.0 316 47.8
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 5.4e-51 205.7 315 41.6
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 9.2e-51 204.9 233 51.5
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 7.3e-48 195.3 271 43.9
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 4.7e-47 192.6 134 71.6
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 4.9e-44 182.6 302 39.7
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 1.1e-43 181.4 271 42.1
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 3.5e-42 176.4 266 42.1
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 2.8e-39 166.8 278 41.0
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 1.8e-38 164.1 142 59.2
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 3.1e-38 163.3 284 40.1
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 1.2e-37 161.4 119 70.6
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 3.4e-37 159.8 266 38.7
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 3.4e-37 159.8 190 48.9
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 4.4e-37 159.5 316 38.6
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 3.6e-31 139.8 177 44.6
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 6.2e-31 139.0 126 56.3
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.8e-30 137.5 177 44.1
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 6.8e-30 135.6 110 69.1
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 6.8e-30 135.6 315 33.3
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 1.4e-27 127.9 198 41.4
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 4.1e-27 126.3 106 66.0
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 2.1e-26 124.0 120 58.3
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 3.9e-25 119.8 126 52.4
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.5e-21 107.8 155 41.3
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 1.6e-18 97.8 157 38.9
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 3.5e-18 96.7 68 60.3
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 1.0e-17 95.1 108 50.0
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 3.6e-15 86.7 108 61.1
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.2e-13 81.6 138 38.4
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 4.2e-11 73.2 113 40.7


User provided reference genes

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