Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 2330.8 1250 100.0
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1318.5 1277 58.9
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1253.0 1184 59.1
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1225.3 1153 60.5
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1213.7 1265 55.2
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1207.2 1128 60.2
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1207.2 1293 54.7
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1201.4 1272 55.0
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 0.0e+00 1200.3 1292 55.0
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1200.3 1131 59.0
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1199.1 1283 55.4
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 0.0e+00 1184.5 1280 54.8
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1183.3 1295 54.3
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1181.4 1282 54.8
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1181.0 1283 53.9
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1174.5 1295 54.2
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1171.8 1301 55.0
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1170.6 1295 53.4
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 0.0e+00 1168.7 1289 54.4
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1166.4 1284 54.3
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1166.0 1324 53.5
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1163.7 1306 54.2
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1157.5 1321 53.0
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 0.0e+00 1157.1 1131 57.6
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1157.1 1158 57.4
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 0.0e+00 1149.4 1187 58.1
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 0.0e+00 1147.9 998 61.5
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1137.9 1310 53.2
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 0.0e+00 1133.6 1242 53.1
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 0.0e+00 1126.3 1145 56.6
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 0.0e+00 1124.8 1175 54.6
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1119.8 1112 58.0
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 0.0e+00 1117.8 1301 51.8
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 0.0e+00 1115.1 1171 54.7
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 0.0e+00 1111.7 1135 56.1
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 0.0e+00 1110.9 1270 51.9
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 0.0e+00 1106.3 1225 54.7
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 0.0e+00 1099.7 1118 56.4
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1096.3 1266 51.8
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 0.0e+00 1095.9 1281 52.2
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 0.0e+00 1094.3 1158 55.0
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 0.0e+00 1085.9 1127 55.6
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1083.9 1307 51.0
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 0.0e+00 1083.6 1109 55.1
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 0.0e+00 1080.5 1134 54.6
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 0.0e+00 1077.8 1296 51.3
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 0.0e+00 1075.5 1336 50.2
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 1.7e-310 1069.7 1270 50.5
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 5.0e-310 1068.1 1291 50.9
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 6.5e-310 1067.8 1036 58.3
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 1.1e-309 1067.0 1305 49.4
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 2.7e-308 1062.4 1374 49.1
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 2.3e-307 1059.3 1088 55.1
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 3.0e-307 1058.9 1109 55.1
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 3.3e-306 1055.4 1125 54.4
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 1.1e-304 1050.4 1136 53.3
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.8e-304 1049.7 1303 49.8
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 1.5e-303 1046.6 1325 48.2
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 5.9e-303 1044.6 1269 50.0
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 1.0e-302 1043.9 1267 50.4
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 1.3e-302 1043.5 1131 53.6
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 1.7e-302 1043.1 1162 51.7
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 8.5e-302 1040.8 1152 52.7
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 1.2e-300 1036.9 1124 54.0
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 1.5e-298 1030.0 1286 49.8
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 9.7e-298 1027.3 1264 50.1
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 9.7e-298 1027.3 1264 49.8
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 9.7e-298 1027.3 1264 49.8
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 9.7e-298 1027.3 1111 54.2
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 3.7e-297 1025.4 1264 49.8
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 3.7e-297 1025.4 1266 49.8
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 3.1e-296 1022.3 1147 52.0
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 5.3e-296 1021.5 1341 47.4
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 1.5e-295 1020.0 1258 48.8
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.6e-295 1019.2 974 58.1
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 4.5e-295 1018.5 1377 46.7
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 5.0e-294 1015.0 1287 49.3
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 3.6e-292 1008.8 1310 47.6
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 5.1e-291 1005.0 1267 49.6
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.1e-290 1003.8 1158 52.2
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 2.9e-286 989.2 1334 46.6
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 4.7e-284 981.9 1147 49.7
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 1.0e-283 980.7 1444 44.9
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 5.2e-283 978.4 1330 47.1
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 3.3e-282 975.7 987 56.3
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 4.5e-279 965.3 1262 47.7
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 2.0e-274 949.9 1121 49.8
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 3.1e-272 942.6 972 55.3
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 7.0e-264 914.8 1135 49.5
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 2.9e-262 909.4 1176 48.6
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 5.0e-254 882.1 1016 52.3
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 3.7e-249 865.9 1255 44.6
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 5.6e-245 852.0 1327 42.6
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.4e-243 847.4 1177 46.7
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 7.5e-242 841.6 1160 46.1
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 3.9e-238 829.3 1126 45.4
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 2.8e-228 796.6 1185 42.7
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 5.8e-226 788.9 1296 41.2
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 9.9e-226 788.1 980 48.6
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 5.4e-224 782.3 552 71.0
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 5.8e-210 735.7 514 72.0
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 2.2e-209 733.8 1073 43.8
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 3.8e-201 706.4 953 46.8
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 5.7e-197 692.6 1285 38.0
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 2.4e-195 687.2 524 65.6
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 2.0e-173 614.4 989 39.8
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 1.3e-156 558.5 1131 34.7
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 5.6e-144 516.5 1224 32.0
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 9.8e-141 505.8 832 41.2
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 4.3e-104 384.0 971 32.1
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.2e-90 339.3 671 40.5
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.2e-83 314.3 246 65.9
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 1.3e-76 292.7 321 55.8
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 4.2e-59 234.6 173 68.2
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-54 217.6 245 47.8
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.0e-52 213.4 173 64.2
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 3.1e-46 191.8 136 70.6
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 6.8e-41 174.1 610 28.2
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.8e-33 149.4 105 64.8
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 3.1e-30 138.7 107 64.5
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.6e-29 136.3 108 64.8
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 5.9e-29 134.4 683 22.5
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.3e-28 132.5 120 57.5
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 7.3e-27 127.5 84 67.9
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.7e-20 106.3 120 49.2
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 6.6e-20 104.4 145 45.5
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.1e-19 103.6 125 48.0
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 1.6e-18 99.8 117 47.9
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 6.2e-18 97.8 71 67.6
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 4.0e-17 95.1 97 57.7
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 2.6e-16 92.4 121 43.8
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.1e-14 87.0 426 28.4
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 9.2e-14 84.0 94 48.9
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 1.6e-13 83.2 130 41.5
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 2.1e-10 72.8 75 57.3
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.4e-09 70.1 86 38.4
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.8e-09 69.7 64 54.7
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 4.4e-08 65.1 44 68.2
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 7.1e-06 57.8 53 49.1


User provided reference genes

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