Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.8e-229 798.9 398 100.0
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 8.2e-142 507.7 401 64.3
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 8.2e-142 507.7 412 64.8
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.1e-141 507.3 399 65.2
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 1.4e-141 506.9 399 65.4
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 3.1e-141 505.8 392 66.6
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 3.8e-139 498.8 405 64.2
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.1e-138 497.3 392 65.1
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 1.2e-137 493.8 389 64.5
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.6e-137 493.4 399 63.7
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 3.0e-136 489.2 407 63.6
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 6.7e-136 488.0 394 64.2
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 1.5e-135 486.9 400 63.8
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 3.3e-135 485.7 398 63.6
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 3.3e-135 485.7 415 63.4
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 4.4e-135 485.3 398 64.1
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 5.7e-135 485.0 400 63.5
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.7e-134 483.4 394 63.2
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 6.3e-134 481.5 391 62.9
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.4e-133 480.3 406 62.1
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 1.4e-133 480.3 389 63.0
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.4e-133 479.6 400 63.0
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 2.4e-133 479.6 399 61.4
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 3.1e-133 479.2 400 62.5
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 4.1e-133 478.8 406 61.8
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 5.3e-133 478.4 406 61.8
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 7.0e-133 478.0 403 62.8
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 7.0e-133 478.0 400 63.2
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.2e-132 477.2 421 61.5
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.7e-131 473.4 398 62.8
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 2.2e-131 473.0 403 61.3
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 2.2e-131 473.0 394 62.7
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 2.2e-131 473.0 409 59.9
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.8e-131 472.2 400 62.0
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.8e-131 472.2 400 62.0
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 2.5e-130 469.5 391 62.1
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 2.5e-130 469.5 393 61.8
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 4.2e-130 468.8 392 61.5
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 5.5e-130 468.4 398 62.6
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 2.1e-129 466.5 392 61.7
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 2.7e-129 466.1 390 62.3
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 1.4e-128 463.8 390 62.3
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.8e-128 463.4 413 60.0
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 4.0e-128 462.2 406 60.3
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 8.8e-128 461.1 447 56.8
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.2e-127 460.7 399 60.4
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 2.0e-127 459.9 402 60.4
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 2.0e-127 459.9 402 60.7
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 2.6e-127 459.5 391 60.9
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.6e-127 459.5 403 61.5
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 5.7e-127 458.4 400 60.5
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 5.7e-127 458.4 402 60.0
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 1.3e-126 457.2 396 59.1
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 4.1e-125 452.2 385 61.0
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 4.1e-125 452.2 389 60.4
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 9.1e-125 451.1 389 60.7
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 1.2e-124 450.7 415 60.0
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 2.0e-124 449.9 400 58.5
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 3.5e-124 449.1 417 56.4
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 7.7e-124 448.0 406 59.6
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.3e-123 447.2 398 58.3
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 1.3e-123 447.2 411 58.6
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.9e-123 446.0 433 56.6
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.5e-122 443.7 417 55.6
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.5e-122 443.7 417 55.9
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.5e-122 443.0 395 60.5
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 9.4e-122 441.0 399 57.4
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.6e-121 440.3 405 58.5
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 4.7e-121 438.7 397 59.4
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 2.3e-120 436.4 400 58.2
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 3.0e-120 436.0 399 56.6
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 3.0e-120 436.0 402 58.7
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.2e-120 435.3 418 55.3
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 5.2e-120 435.3 418 55.5
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 5.2e-120 435.3 390 57.9
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 8.8e-120 434.5 423 54.8
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 7.5e-119 431.4 399 57.4
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 1.7e-118 430.3 386 58.3
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 6.3e-118 428.3 457 52.7
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 8.3e-118 427.9 406 56.9
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 3.1e-117 426.0 398 58.3
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 9.1e-117 424.5 399 56.6
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.7e-115 420.2 396 58.1
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 2.3e-115 419.9 387 58.7
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.1e-114 417.5 368 60.1
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 7.2e-114 414.8 395 55.2
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 5.2e-112 408.7 392 57.9
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 5.2e-112 408.7 382 57.3
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 1.5e-111 407.1 367 60.2
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 7.8e-108 394.8 419 52.0
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 5.6e-106 388.7 384 54.7
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 2.1e-105 386.7 384 54.7
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 2.1e-105 386.7 390 52.1
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 3.6e-105 386.0 390 53.6
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 4.0e-104 382.5 387 54.5
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 1.2e-103 380.9 393 55.2
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 5.4e-101 372.1 390 51.8
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 2.0e-100 370.2 320 60.3
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 2.3e-99 366.7 413 50.4
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 8.6e-99 364.8 417 48.0
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 4.3e-98 362.5 414 47.3
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 1.6e-97 360.5 385 51.2
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 9.8e-95 351.3 290 61.4
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 9.2e-93 344.7 295 62.0
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 2.3e-91 340.1 420 47.1
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 2.5e-90 336.7 302 58.6
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.1e-88 331.3 456 43.9
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.3e-88 330.1 463 45.1
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 7.6e-87 325.1 268 60.4
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.9e-82 310.5 401 43.1
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.3e-82 309.7 372 48.7
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 1.3e-78 297.7 403 45.7
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 4.9e-78 295.8 396 45.7
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.9e-77 293.9 246 63.8
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 5.4e-77 292.4 432 40.0
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 4.3e-74 282.7 367 46.9
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 7.3e-74 282.0 402 44.0
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 2.1e-65 253.8 449 35.9
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 1.1e-64 251.5 458 36.2
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 1.6e-60 237.7 211 58.8
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.6e-57 227.6 409 36.7
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.1e-56 224.9 302 46.0
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 5.8e-55 219.2 168 63.1
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 6.5e-54 215.7 286 42.7
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.9e-50 204.1 185 56.2
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 1.8e-43 181.0 177 54.2
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 2.3e-43 180.6 157 60.5
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.2e-41 174.1 176 49.4
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 3.7e-41 173.3 186 52.7
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 1.0e-38 165.2 112 72.3
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 3.3e-34 150.2 176 50.0
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 1.4e-29 134.8 184 46.2
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 1.0e-27 128.6 261 34.5
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 4.4e-26 123.2 89 65.2
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 5.5e-21 106.3 150 40.0
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 8.2e-17 92.4 112 48.2
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 2.0e-15 87.8 65 61.5
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 2.0e-15 87.8 89 48.3
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.9e-14 84.0 151 39.7
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.5e-13 81.6 52 75.0
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 3.2e-13 80.5 108 49.1
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 3.2e-13 80.5 108 49.1
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 2.1e-12 77.8 93 46.2
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 4.7e-12 76.6 66 57.6
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 4.7e-12 76.6 66 57.6
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 1.2e-10 72.0 387 23.0


User provided reference genes

Program Settings