Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.4e-96 356.3 181 100.0
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 5.3e-72 274.6 181 78.5
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 9.1e-72 273.9 181 77.3
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 2.9e-70 268.9 181 76.8
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.9e-70 268.9 181 77.3
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 5.0e-70 268.1 181 77.9
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 6.5e-70 267.7 182 79.1
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 6.5e-70 267.7 181 77.3
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.1e-69 266.9 181 75.1
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 1.1e-69 266.9 181 77.3
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.9e-69 266.2 181 76.2
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.9e-69 266.2 176 77.8
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 2.5e-69 265.8 181 75.1
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 3.2e-69 265.4 181 75.7
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.2e-69 265.4 181 76.2
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.2e-69 265.4 181 76.2
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.2e-69 265.4 181 76.2
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 4.2e-69 265.0 181 76.8
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 4.2e-69 265.0 181 76.2
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 5.5e-69 264.6 179 74.9
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 5.5e-69 264.6 181 74.0
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 5.5e-69 264.6 181 74.0
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.2e-68 263.5 181 73.5
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.1e-68 262.7 181 74.6
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 2.7e-68 262.3 181 77.3
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 4.7e-68 261.5 179 76.0
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 6.1e-68 261.2 181 75.1
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 1.4e-67 260.0 178 77.0
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 1.4e-67 260.0 181 74.0
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.8e-67 259.6 181 74.0
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 3.0e-67 258.8 179 73.7
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 3.9e-67 258.5 181 73.5
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 5.2e-67 258.1 181 74.6
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 5.2e-67 258.1 181 74.6
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 8.8e-67 257.3 174 75.9
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.1e-66 256.9 181 73.5
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 1.5e-66 256.5 181 73.5
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 1.5e-66 256.5 181 74.0
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 2.0e-66 256.1 180 75.0
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.0e-66 256.1 210 66.7
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.0e-66 256.1 210 66.7
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.0e-66 256.1 210 66.7
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 2.0e-66 256.1 171 77.2
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 2.6e-66 255.8 181 70.7
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 2.6e-66 255.8 181 70.7
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 2.6e-66 255.8 183 71.0
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 3.3e-66 255.4 181 70.2
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 4.4e-66 255.0 169 76.3
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 5.7e-66 254.6 181 70.2
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 5.7e-66 254.6 191 70.7
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 5.7e-66 254.6 181 70.2
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 9.7e-66 253.8 181 70.7
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 9.7e-66 253.8 205 68.8
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.7e-65 253.1 181 70.7
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.7e-65 253.1 179 73.2
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 2.8e-65 252.3 181 70.7
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.8e-65 252.3 181 69.6
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 3.7e-65 251.9 181 69.6
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 3.7e-65 251.9 172 75.6
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 6.3e-65 251.1 178 73.6
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 6.3e-65 251.1 181 72.4
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 8.2e-65 250.8 181 70.7
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 8.2e-65 250.8 181 70.2
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.1e-64 250.4 181 69.6
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.1e-64 250.4 181 69.6
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.1e-64 250.4 177 72.3
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 1.4e-64 250.0 178 71.9
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.8e-64 249.6 181 69.6
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.4e-64 249.2 181 68.5
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 2.4e-64 249.2 181 69.6
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 2.4e-64 249.2 180 68.9
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 2.4e-64 249.2 183 71.0
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.4e-64 249.2 179 73.2
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 2.4e-64 249.2 181 69.6
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 3.1e-64 248.8 178 71.3
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 3.1e-64 248.8 181 68.5
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 4.1e-64 248.4 181 69.1
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 5.3e-64 248.1 181 68.0
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 1.2e-63 246.9 187 70.1
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.2e-63 246.9 181 68.5
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 2.6e-63 245.7 181 70.7
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 3.5e-63 245.4 179 68.2
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 4.5e-63 245.0 181 69.1
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 4.5e-63 245.0 180 70.0
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.0e-62 243.8 181 68.5
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 1.7e-62 243.0 181 67.4
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 2.2e-62 242.7 181 69.6
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 2.2e-62 242.7 181 67.4
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 3.8e-62 241.9 187 69.5
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 6.5e-62 241.1 174 70.1
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 6.5e-62 241.1 174 70.1
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 6.5e-62 241.1 174 70.1
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 6.5e-62 241.1 182 69.8
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 1.1e-61 240.4 178 69.1
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.5e-61 240.0 179 71.5
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 2.5e-61 239.2 214 60.3
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 2.5e-61 239.2 182 69.8
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 5.5e-61 238.0 167 71.3
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 2.7e-60 235.7 182 67.6
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 3.6e-60 235.3 185 68.1
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 4.7e-60 235.0 179 65.4
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 8.0e-60 234.2 177 70.6
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 2.6e-58 229.2 175 64.6
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.3e-57 226.9 183 65.0
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.7e-57 226.5 175 63.4
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-56 223.8 219 58.9
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.3e-56 221.5 139 79.1
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 5.3e-56 221.5 228 57.5
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 4.5e-55 218.4 198 63.1
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 2.9e-54 215.7 152 71.7
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 6.5e-54 214.5 272 48.2
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 6.1e-52 208.0 181 59.1
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 1.8e-51 206.5 235 51.5
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 9.1e-48 194.1 120 80.8
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 9.1e-48 194.1 174 63.2
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 1.5e-45 186.8 181 59.7
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.9e-45 186.4 172 58.7
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.4e-43 180.3 113 76.1
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.2e-42 177.2 179 53.6
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 4.5e-39 165.2 138 62.3
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.2e-34 150.6 117 65.8
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 1.5e-34 150.2 118 65.3
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 3.4e-34 149.1 117 68.4
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 2.2e-33 146.4 116 63.8
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 3.7e-33 145.6 106 69.8
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 2.4e-32 142.9 139 47.5
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 3.2e-32 142.5 126 63.5
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 5.4e-32 141.7 122 63.1
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 2.0e-31 139.8 173 40.5
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 7.8e-31 137.9 114 58.8
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 6.8e-27 124.8 111 63.1
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 3.7e-25 119.0 74 75.7
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 3.7e-25 119.0 74 75.7
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 3.7e-25 119.0 109 59.6
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 5.1e-22 108.6 89 65.2
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 5.1e-22 108.6 63 84.1
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.6e-22 108.2 114 53.5
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 3.3e-21 105.9 117 40.2
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 7.3e-21 104.8 61 83.6
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.6e-20 102.4 114 51.8
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 3.6e-20 102.4 64 78.1
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 1.4e-19 100.5 65 72.3
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 2.3e-19 99.8 106 40.6
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 5.2e-19 98.6 65 72.3
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 3.4e-18 95.9 106 43.4
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 6.4e-17 91.7 104 40.4
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 7.1e-16 88.2 65 58.5
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.5e-13 80.5 104 48.1
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 9.6e-13 77.8 50 74.0
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 2.8e-12 76.3 136 33.1
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.7e-06 57.0 32 87.5


User provided reference genes

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