Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 6.5e-152 541.2 323 100.0
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 3.0e-120 436.0 323 84.5
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 5.6e-119 431.8 318 79.2
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 1.2e-116 424.1 328 82.3
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 1.5e-116 423.7 327 82.0
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 1.3e-115 420.6 252 84.5
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 3.7e-115 419.1 318 77.0
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 6.4e-115 418.3 318 77.4
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 6.4e-115 418.3 333 80.5
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.4e-114 417.2 332 80.7
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.4e-114 417.2 336 79.8
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 1.6e-113 413.7 252 83.3
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 2.1e-113 413.3 325 79.7
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 4.6e-113 412.1 335 80.3
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 7.8e-113 411.4 325 75.7
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 7.8e-113 411.4 322 77.6
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 1.7e-112 410.2 326 75.5
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 3.0e-112 409.5 321 76.6
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 1.5e-111 407.1 325 75.1
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.6e-111 405.2 325 81.8
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 9.5e-111 404.4 319 75.5
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 1.2e-110 404.1 327 75.5
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 3.6e-110 402.5 329 77.8
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 6.2e-110 401.7 323 79.9
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 6.2e-110 401.7 320 77.2
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 1.4e-109 400.6 324 77.8
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 4.0e-109 399.1 246 83.7
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 8.9e-109 397.9 325 79.4
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.2e-108 397.5 324 80.9
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 2.0e-108 396.7 341 76.5
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 2.0e-108 396.7 341 76.5
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 2.0e-108 396.7 333 76.6
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 7.5e-108 394.8 331 79.2
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 2.2e-107 393.3 266 78.6
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.4e-106 390.6 347 74.9
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 3.0e-104 382.9 321 71.3
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 3.0e-104 382.9 323 68.7
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.1e-103 380.9 325 78.8
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 1.5e-103 380.6 321 71.0
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.9e-103 380.2 327 66.1
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 3.3e-103 379.4 318 76.4
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 5.6e-103 378.6 322 71.4
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 5.6e-103 378.6 255 77.3
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 7.3e-103 378.3 334 71.0
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 9.5e-103 377.9 321 71.3
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 2.1e-102 376.7 326 71.5
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 2.1e-102 376.7 326 71.5
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 4.7e-102 375.6 325 71.1
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 4.7e-102 375.6 323 74.3
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 6.2e-102 375.2 322 69.9
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.8e-101 373.6 242 81.4
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 4.0e-101 372.5 323 70.0
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 6.8e-101 371.7 329 70.8
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 8.9e-101 371.3 327 69.7
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 2.9e-99 366.3 328 64.3
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 6.4e-99 365.2 323 68.4
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 6.4e-99 365.2 317 64.7
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 6.4e-99 365.2 325 74.8
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 7.1e-98 361.7 324 67.9
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 9.2e-98 361.3 327 74.0
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 9.2e-98 361.3 325 66.5
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 9.2e-98 361.3 325 66.5
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.6e-97 360.5 324 63.3
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.7e-97 359.8 327 74.3
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 3.5e-97 359.4 328 66.5
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 1.0e-96 357.8 327 69.4
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 6.6e-96 355.1 327 73.7
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 8.7e-96 354.8 325 72.6
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 1.5e-95 354.0 323 74.3
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 4.3e-95 352.4 333 65.2
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 1.6e-94 350.5 325 73.2
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 2.1e-94 350.1 248 72.6
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 6.2e-94 348.6 328 73.2
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 6.2e-94 348.6 320 62.2
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 1.8e-93 347.1 249 75.1
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 1.8e-93 347.1 287 66.2
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 1.2e-92 344.4 327 62.7
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 1.5e-92 344.0 216 82.4
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.6e-92 343.2 256 71.5
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 2.6e-92 343.2 327 61.2
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 1.3e-91 340.9 320 71.6
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 2.2e-91 340.1 325 60.6
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 2.9e-91 339.7 332 68.7
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 3.8e-91 339.3 325 68.9
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 3.8e-91 339.3 253 72.7
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 1.4e-90 337.4 215 83.3
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 3.2e-90 336.3 348 59.5
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 9.3e-90 334.7 324 64.5
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.1e-89 333.6 326 66.6
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 6.6e-88 328.6 214 82.2
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 2.8e-86 323.2 318 61.6
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.7e-81 306.6 258 65.5
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 6.0e-81 305.4 218 76.1
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 1.3e-78 297.7 241 65.6
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 3.7e-78 296.2 322 56.8
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 1.1e-77 294.7 227 70.5
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.4e-77 293.5 354 61.9
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.3e-77 292.4 321 55.1
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 2.2e-75 287.0 259 59.8
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.2e-75 287.0 241 64.3
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 2.2e-75 287.0 260 65.4
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 3.8e-75 286.2 245 66.5
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 6.4e-75 285.4 399 50.4
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 6.4e-75 285.4 189 81.0
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 6.4e-75 285.4 344 55.2
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.7e-73 280.0 243 64.2
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 7.9e-73 278.5 231 70.1
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 1.5e-71 274.2 206 72.8
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 9.6e-71 271.6 247 60.3
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 3.7e-70 269.6 328 55.2
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 6.2e-70 268.9 330 62.4
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 6.9e-69 265.4 337 57.6
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 1.3e-67 261.2 336 63.4
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 2.2e-67 260.4 218 72.9
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 4.9e-67 259.2 336 54.8
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.2e-65 254.6 332 54.8
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 7.9e-65 251.9 323 50.5
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 1.0e-64 251.5 341 54.8
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 4.1e-61 239.6 259 55.6
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 4.1e-61 239.6 259 55.6
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 1.9e-58 230.7 262 53.8
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 1.9e-58 230.7 262 53.8
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 4.2e-58 229.6 262 53.8
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 6.3e-54 215.7 256 53.1
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.8e-53 214.2 209 71.8
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 6.5e-51 205.7 262 46.9
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 6.3e-46 189.1 132 79.5
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.7e-43 181.0 102 91.2
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 2.6e-39 167.2 146 66.4
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 3.8e-35 153.3 221 48.4
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 2.7e-28 130.6 157 44.6
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 1.3e-27 128.3 147 47.6
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 6.5e-27 125.9 217 44.7
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 5.2e-24 116.3 111 69.4
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 2.0e-23 114.4 136 41.9
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 1.7e-22 111.3 144 42.4
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.7e-20 104.0 114 44.7
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 4.5e-20 103.2 116 81.9
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.3e-19 100.9 111 80.2
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.9e-18 97.8 113 43.4
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 3.3e-18 97.1 111 54.1
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 5.5e-18 96.3 129 38.0
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 9.5e-18 95.5 104 58.7
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 3.0e-16 90.5 117 78.6
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 2.8e-14 84.0 41 87.8
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 1.1e-13 82.0 123 73.2
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 7.0e-13 79.3 53 66.0
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 6.1e-09 66.2 41 75.6


User provided reference genes

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