Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 3.3e-102 376.7 182 100.0
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 7.9e-40 169.5 141 56.0
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 1.0e-39 169.1 124 62.1
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 2.3e-39 167.9 150 53.3
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.7e-39 166.4 156 53.2
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 8.8e-39 166.0 106 68.9
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.1e-38 165.6 152 51.3
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 1.1e-38 165.6 152 51.3
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 9.7e-38 162.5 151 50.3
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 2.2e-37 161.4 161 53.4
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 6.3e-37 159.8 125 60.0
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 8.2e-37 159.5 143 53.8
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 8.2e-37 159.5 143 53.8
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 1.1e-36 159.1 135 57.0
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.1e-36 157.5 131 56.5
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 4.1e-36 157.1 109 62.4
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 5.3e-36 156.8 101 68.3
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 7.0e-36 156.4 98 67.3
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 1.5e-35 155.2 103 65.0
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 5.9e-35 153.3 104 65.4
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 1.3e-34 152.1 102 65.7
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 2.2e-34 151.4 132 55.3
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 8.5e-34 149.4 141 50.4
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 8.5e-34 149.4 141 51.1
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 8.5e-34 149.4 127 52.8
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.9e-33 148.3 118 55.1
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 2.5e-33 147.9 134 52.2
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 3.2e-33 147.5 142 51.4
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 3.2e-33 147.5 142 51.4
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 4.2e-33 147.1 120 56.7
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 5.5e-33 146.7 144 52.1
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 5.5e-33 146.7 129 52.7
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 1.2e-32 145.6 125 54.4
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 1.2e-32 145.6 111 56.8
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 2.7e-32 144.4 110 60.0
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 3.6e-32 144.1 106 58.5
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 3.6e-32 144.1 178 38.8
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 3.6e-32 144.1 109 56.0
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 8.0e-32 142.9 132 56.1
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 8.0e-32 142.9 144 52.1
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 1.0e-31 142.5 106 57.5
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.8e-31 141.7 96 62.5
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 9.7e-30 136.0 136 49.3
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 1.3e-29 135.6 145 50.3
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 8.2e-29 132.9 122 53.3
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 4.1e-28 130.6 130 52.3
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 2.6e-27 127.9 171 39.2
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.9e-27 126.7 167 42.5
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.9e-27 126.7 167 42.5
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 7.7e-27 126.3 156 43.6
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.7e-27 126.3 157 43.3
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 2.9e-26 124.4 124 48.4
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 3.8e-26 124.0 135 46.7
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 1.1e-25 122.5 156 42.9
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 1.9e-25 121.7 103 50.5
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 2.5e-25 121.3 161 43.5
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 4.2e-25 120.6 98 59.2
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 1.2e-24 119.0 103 49.5
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 2.7e-24 117.9 142 44.4
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.0e-23 115.9 108 52.8
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 4.0e-23 114.0 106 49.1
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 6.8e-23 113.2 123 44.7
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 1.2e-22 112.5 76 65.8
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 1.5e-22 112.1 151 41.7
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 1.5e-22 112.1 100 52.0
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 2.0e-22 111.7 105 48.6
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 1.7e-21 108.6 123 42.3
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 2.2e-21 108.2 71 64.8
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 2.8e-21 107.8 152 38.8
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 4.8e-21 107.1 76 59.2
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 4.8e-21 107.1 145 38.6
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 4.1e-20 104.0 70 64.3
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 1.2e-19 102.4 70 61.4
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 2.0e-19 101.7 157 38.9
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 3.5e-19 100.9 108 43.5
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 5.9e-19 100.1 142 38.7
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 3.8e-18 97.4 70 55.7
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 5.0e-18 97.1 105 43.8
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 5.0e-18 97.1 86 51.2
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 6.5e-18 96.7 105 42.9
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 2.5e-17 94.7 105 42.9
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 4.2e-17 94.0 103 40.8
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 7.2e-17 93.2 134 36.6
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 2.7e-16 91.3 142 35.9
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 4.7e-16 90.5 55 80.0
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 4.0e-15 87.4 72 51.4
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 2.0e-14 85.1 87 42.5
CANSAT54G0748 Cannabis sativa HOM05D007536 ORTHO05D009390 2.0e-14 85.1 224 30.4
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 3.4e-14 84.3 105 38.1
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 4.4e-14 84.0 147 31.3
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 9.8e-14 82.8 88 42.0
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.3e-13 82.4 88 40.9
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 2.2e-13 81.6 104 42.3
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 8.3e-13 79.7 52 71.2
Thhalv10022408m.g Eutrema salsugineum HOM05D007620 ORTHO05D009568 1.7e-10 72.0 44 70.5
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.3e-10 71.6 98 41.8
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.3e-10 71.6 98 41.8
Nitab4.5_0006737g0010 Nicotiana tabacum HOM05D007620 ORTHO05D009568 1.1e-09 69.3 43 67.4
Glyma.19G248500 Glycine max HOM05D007620 ORTHO05D009568 1.5e-09 68.9 59 55.9
Sopen04g005200 Solanum pennellii HOM05D007620 ORTHO05D009568 1.9e-09 68.6 43 65.1
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 4.3e-09 67.4 91 37.4
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 5.6e-09 67.0 95 40.0
Nitab4.5_0003780g0130 Nicotiana tabacum HOM05D007620 ORTHO05D009568 7.2e-09 66.6 43 65.1
Oeu028579.1 Olea europaea HOM05D000424 ORTHO05D000355 1.0e-07 62.8 99 30.3
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 8.9e-07 59.7 152 30.3
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 8.9e-07 59.7 91 27.5
MSTRG.21866 Avicennia marina HOM05D000424 ORTHO05D000355 1.2e-06 59.3 98 25.5
Migut.N00201 Erythranthe guttata HOM05D000424 ORTHO05D000355 1.2e-06 59.3 99 27.3
Gohir.A03G129100 Gossypium hirsutum HOM05D000424 ORTHO05D008586 1.2e-06 59.3 97 29.9
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 1.5e-06 58.9 97 32.0
Gohir.D02G152900 Gossypium hirsutum HOM05D000424 ORTHO05D008586 2.0e-06 58.5 97 28.9
Gorai.005G172000 Gossypium raimondii HOM05D000424 ORTHO05D008586 2.0e-06 58.5 97 28.9
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 2.0e-06 58.5 91 27.5
CDE12G0214 Ceratophyllum demersum HOM05D000891 ORTHO05D000761 2.6e-06 58.2 89 31.5
AT3G22670 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 4.4e-06 57.4 98 30.6
Carub.0003s2283 Capsella rubella HOM05D000424 ORTHO05D000355 4.4e-06 57.4 98 31.6
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 4.4e-06 57.4 95 31.6
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 5.7e-06 57.0 96 32.3
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 7.5e-06 56.6 92 34.8
Thhalv10020419m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 7.5e-06 56.6 98 30.6
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 7.5e-06 56.6 94 31.9
Carub.0003s3177 Capsella rubella HOM05D007700 ORTHO05D009669 9.8e-06 56.2 96 32.3
Migut.D02192 Erythranthe guttata HOM05D007402 ORTHO05D003673 9.8e-06 56.2 77 33.8
Hma1.2p1_1572F.1_g291500 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 9.8e-06 56.2 100 26.0
SGA_v2.0_scaffold165G38282 Striga asiatica HOM05D000424 ORTHO05D000355 9.8e-06 56.2 98 26.5
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 9.8e-06 56.2 116 31.9
TWI79G1119 Tripterygium wilfordii HOM05D005362 ORTHO05D000355 9.8e-06 56.2 95 29.5


User provided reference genes

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