Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 0.0e+00 1497.3 738 100.0
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 1.3e-305 1052.7 756 68.3
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 9.1e-304 1046.6 714 70.4
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 4.4e-298 1027.7 702 70.4
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.2e-295 1019.6 745 64.6
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 1.0e-294 1016.5 704 69.2
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 2.9e-294 1015.0 709 69.5
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 3.8e-294 1014.6 699 70.5
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.9e-293 1012.3 745 65.5
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 9.4e-293 1010.0 746 64.9
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.2e-292 1009.6 746 66.1
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 7.0e-288 993.8 709 69.8
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 1.6e-287 992.6 741 64.0
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 2.0e-287 992.3 700 68.0
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 4.5e-287 991.1 700 67.9
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 7.7e-287 990.3 745 65.5
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 7.3e-285 983.8 748 63.9
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 1.6e-284 982.6 804 59.8
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 2.8e-284 981.9 699 66.7
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 8.0e-284 980.3 700 68.3
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 5.2e-283 977.6 703 67.7
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 2.7e-279 965.3 704 65.6
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 4.6e-279 964.5 697 66.4
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 1.5e-277 959.5 702 64.7
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 2.8e-276 955.3 700 65.7
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 1.0e-275 953.4 703 64.4
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 2.3e-275 952.2 717 64.0
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 2.3e-275 952.2 700 65.4
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 8.9e-275 950.3 702 64.4
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 9.8e-274 946.8 704 64.8
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 8.3e-273 943.7 744 62.5
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 7.8e-271 937.2 743 62.2
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 7.8e-271 937.2 702 65.0
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.3e-270 936.4 752 61.6
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 6.6e-270 934.1 703 65.6
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 1.1e-269 933.3 699 66.5
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 1.6e-268 929.5 697 64.1
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 1.1e-267 926.8 717 64.0
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 2.6e-266 922.2 697 63.4
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 4.4e-266 921.4 704 63.1
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 1.3e-265 919.8 744 61.2
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 1.1e-264 916.8 707 63.4
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 1.9e-264 916.0 705 62.4
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.3e-262 909.8 701 63.1
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.9e-261 906.0 701 63.2
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 6.2e-260 901.0 699 62.1
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 8.1e-260 900.6 622 69.9
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 4.0e-259 898.3 718 63.1
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 7.6e-258 894.0 710 61.0
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 6.4e-257 891.0 751 59.9
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 2.4e-256 889.0 699 61.7
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.6e-255 886.3 701 61.6
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 2.7e-255 885.6 739 58.6
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 7.8e-255 884.0 699 61.9
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 3.0e-254 882.1 699 61.5
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 3.9e-254 881.7 699 60.9
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 6.6e-254 880.9 683 62.1
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.9e-253 879.4 699 60.8
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 4.3e-253 878.2 746 59.1
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 7.6e-250 867.5 701 60.9
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 1.3e-249 866.7 695 60.4
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.1e-248 863.6 703 60.5
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.9e-248 862.8 698 60.2
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 4.6e-247 858.2 702 59.5
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 5.6e-245 851.3 719 59.0
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 9.6e-245 850.5 620 66.8
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 8.1e-244 847.4 700 57.9
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 2.4e-243 845.9 718 58.2
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 9.9e-242 840.5 704 58.1
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 1.7e-241 839.7 752 56.4
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.9e-240 836.3 752 57.7
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 3.9e-238 828.6 752 55.9
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 5.1e-238 828.2 699 57.8
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 9.9e-234 813.9 695 58.0
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 1.3e-233 813.5 672 58.6
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 1.3e-233 813.5 740 56.5
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 1.3e-233 813.5 761 54.5
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 2.9e-233 812.4 696 56.6
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.7e-231 805.8 749 54.1
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.7e-223 779.2 707 53.7
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 1.9e-221 773.1 706 53.5
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.6e-220 770.0 673 57.2
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 1.6e-220 770.0 739 54.1
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 1.8e-219 766.5 710 53.2
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 5.3e-219 765.0 696 54.6
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.9e-216 756.5 695 54.7
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 5.5e-216 755.0 644 59.0
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 5.5e-216 755.0 678 54.4
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 7.4e-213 744.6 547 64.4
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.6e-207 726.9 631 56.3
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 9.7e-205 717.6 681 53.9
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 2.6e-202 709.5 686 52.6
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 3.8e-201 705.7 707 50.4
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.1e-192 677.6 691 50.2
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 7.7e-186 654.8 583 55.6
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 1.0e-182 644.4 638 53.3
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.7e-180 637.1 479 63.9
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 4.4e-173 612.5 708 46.8
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 1.5e-152 544.3 402 66.2
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 1.0e-145 521.5 516 52.9
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 2.3e-145 520.4 430 60.2
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 1.1e-134 485.0 664 39.2
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.3e-127 461.5 770 36.0
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 6.2e-127 459.1 768 37.1
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 3.7e-119 433.3 692 36.6
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 1.3e-116 424.9 728 36.1
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 4.2e-115 419.9 633 38.9
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 2.8e-111 407.1 365 55.3
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 4.9e-108 396.4 810 33.1
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.5e-104 384.8 765 32.8
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 6.3e-103 379.4 344 54.4
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 2.5e-96 357.5 334 57.5
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 4.1e-86 323.6 286 57.3
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 5.0e-68 263.5 176 69.3
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 4.2e-67 260.4 564 30.9
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 2.7e-61 241.1 189 58.7
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 3.8e-60 237.3 138 79.7
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 5.2e-57 226.9 183 61.7
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 8.9e-57 226.1 331 38.7
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 4.4e-56 223.8 166 62.7
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.1e-42 178.3 458 29.0
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 6.4e-31 140.2 127 48.0
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 7.3e-27 126.7 123 48.8
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 8.1e-26 123.2 103 52.4
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 5.4e-22 110.5 75 66.7
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 1.5e-16 92.4 399 24.3
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 5.8e-16 90.5 80 56.2
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 4.2e-14 84.3 80 50.0
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.6e-12 77.0 80 46.2
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.5e-08 64.3 101 38.6
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 9.9e-08 63.2 65 53.8
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 2.2e-07 62.0 164 30.5
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 4.9e-07 60.8 48 62.5
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.9e-07 60.8 49 53.1


User provided reference genes

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