Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 7.4e-272 939.9 455 100.0
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 4.0e-233 811.2 460 83.5
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.7e-231 805.8 456 82.7
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 4.1e-230 801.2 455 82.4
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 7.0e-230 800.4 446 83.9
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.6e-229 799.3 457 82.5
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.6e-229 799.3 457 82.5
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 1.6e-229 799.3 457 81.6
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 4.5e-229 797.7 457 82.3
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 7.8e-229 797.0 455 82.2
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.7e-228 795.8 460 81.7
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.5e-227 792.7 445 83.8
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 2.5e-227 792.0 469 81.2
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 8.0e-226 786.9 455 81.1
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.0e-225 786.6 455 81.3
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 3.0e-225 785.0 462 80.5
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 5.2e-225 784.3 455 82.0
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 2.0e-224 782.3 451 82.3
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 9.8e-224 780.0 456 81.8
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.7e-223 778.1 457 80.1
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 3.5e-221 771.5 457 79.4
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 3.0e-220 768.5 455 80.4
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 3.9e-220 768.1 459 79.1
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 5.0e-220 767.7 457 79.6
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 6.6e-220 767.3 445 80.2
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 3.3e-219 765.0 456 80.0
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 1.6e-218 762.7 458 78.2
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 8.9e-217 756.9 458 77.7
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 1.2e-216 756.5 455 78.0
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 3.4e-216 755.0 461 76.8
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 2.2e-215 752.3 458 77.9
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 6.4e-215 750.7 444 80.0
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 6.4e-215 750.7 458 77.1
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 1.6e-213 746.1 455 77.6
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 7.8e-213 743.8 465 77.2
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 6.6e-212 740.7 455 76.9
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.1e-211 740.0 444 79.1
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 9.5e-211 736.9 458 75.1
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 6.2e-210 734.2 462 75.5
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.4e-209 733.0 446 77.6
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 2.3e-209 732.3 427 80.3
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 8.9e-209 730.3 457 77.0
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.2e-208 729.9 437 78.9
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.2e-208 729.9 426 80.8
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 4.4e-208 728.0 457 74.6
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.7e-207 724.9 436 78.7
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 8.3e-207 723.8 426 78.9
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.1e-206 723.4 426 78.9
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.9e-206 722.6 458 73.8
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.4e-206 722.2 439 78.1
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.2e-206 721.8 460 75.4
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 3.2e-206 721.8 426 78.9
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 5.4e-206 721.1 458 73.6
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.2e-205 719.9 455 74.1
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.7e-205 718.8 458 73.4
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.7e-205 718.8 459 75.2
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 2.7e-205 718.8 425 78.8
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.0e-204 716.8 460 75.2
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.3e-204 715.7 461 75.1
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 1.1e-203 713.4 432 77.8
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.5e-203 713.0 426 77.5
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.6e-202 709.5 457 72.9
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 2.8e-202 708.8 452 74.3
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 6.2e-202 707.6 433 76.4
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 1.4e-201 706.4 449 73.3
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.2e-200 703.4 438 77.2
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.4e-200 701.8 461 74.4
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 9.9e-200 700.3 473 70.4
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 4.9e-199 698.0 447 73.2
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 6.0e-197 691.0 457 72.9
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 3.0e-196 688.7 457 72.2
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 8.6e-196 687.2 457 72.4
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.9e-195 686.0 394 81.5
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.3e-195 684.9 457 73.3
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 8.1e-194 680.6 408 78.9
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 3.4e-192 675.2 453 71.7
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 3.4e-192 675.2 470 68.3
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 6.4e-191 671.0 467 70.7
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 1.2e-189 666.8 494 65.6
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.6e-189 666.4 487 68.6
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 6.0e-189 664.5 455 67.0
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.0e-188 662.1 456 68.0
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 8.7e-188 660.6 459 67.3
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.5e-187 659.8 458 67.9
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.5e-187 659.8 456 68.2
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 3.3e-187 658.7 462 67.5
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 4.3e-187 658.3 460 67.6
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 5.6e-187 657.9 457 67.4
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 5.6e-187 657.9 459 67.5
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 9.6e-187 657.1 456 67.1
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.3e-186 656.8 457 67.4
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 4.8e-186 654.8 459 67.3
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 4.8e-186 654.8 459 67.3
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.9e-183 645.6 366 82.8
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 4.6e-181 638.3 459 66.4
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.9e-180 635.2 463 65.7
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 3.3e-179 632.1 384 78.4
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 4.0e-177 625.2 446 66.1
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 5.3e-177 624.8 468 63.9
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 5.8e-176 621.3 461 66.6
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.4e-174 616.7 400 74.2
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 2.4e-174 615.9 538 59.1
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 5.5e-174 614.8 380 77.1
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 1.2e-173 613.6 462 66.2
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.0e-172 610.5 447 64.4
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.3e-171 605.5 441 68.5
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.3e-171 605.5 473 64.9
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 6.2e-170 601.3 423 70.4
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.3e-167 593.6 403 69.2
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.7e-167 593.2 488 60.9
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 9.3e-166 587.4 424 66.3
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 2.9e-159 565.8 454 59.3
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 3.3e-155 552.4 457 58.6
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.7e-151 540.0 436 56.2
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 3.8e-151 538.9 436 56.9
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.6e-149 532.3 351 72.4
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 5.5e-142 508.4 480 56.0
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 2.3e-140 503.1 426 59.2
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 6.3e-138 495.0 467 54.6
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 5.0e-135 485.3 290 78.6
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.2e-131 474.2 290 77.2
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 7.2e-126 454.9 462 56.1
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.2e-124 448.7 418 56.9
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 8.3e-122 441.4 332 66.6
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.1e-121 439.5 347 61.1
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 4.5e-120 435.6 347 60.2
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 2.9e-119 433.0 271 76.4
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 5.8e-107 392.1 376 50.3
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 6.0e-96 355.5 204 78.9
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 1.0e-95 354.8 431 43.6
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.7e-95 354.0 412 44.2
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 6.4e-90 335.5 214 75.7
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 4.1e-89 332.8 281 61.6
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 2.0e-75 287.3 175 78.3
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.4e-57 228.0 218 58.7
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.5e-56 223.4 119 84.0
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 3.0e-55 220.3 194 56.7
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 3.8e-50 203.4 182 56.6
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.5e-48 196.8 241 47.7
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.0e-48 196.1 239 48.1
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 7.4e-46 189.1 157 60.5
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 2.5e-41 174.1 109 72.5
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.1e-38 165.2 234 40.2
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 9.7e-38 162.2 196 47.4
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 2.0e-35 154.5 85 83.5
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.6e-35 154.1 239 42.3
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 3.8e-34 150.2 94 75.5
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 8.5e-26 122.5 71 73.2
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.2e-25 120.6 85 68.2
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 2.2e-21 107.8 62 77.4
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 4.1e-20 103.6 70 71.4
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 9.1e-20 102.4 130 41.5
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.2e-13 81.3 80 55.0
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 3.1e-12 77.4 61 63.9
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 7.2e-09 66.2 36 83.3
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 9.4e-09 65.9 42 64.3


User provided reference genes

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