Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 8.7e-251 869.8 420 100.0
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 6.0e-159 564.7 446 63.0
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 7.8e-151 537.7 442 61.3
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.0e-150 535.8 443 60.5
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.9e-150 535.4 443 59.6
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 6.6e-150 534.6 439 60.8
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.5e-149 532.7 443 59.6
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 1.6e-148 530.0 441 59.9
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.8e-148 529.3 441 59.6
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 1.2e-143 513.8 466 59.2
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 2.7e-143 512.7 457 58.2
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.0e-142 510.8 434 58.5
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 2.3e-142 509.6 447 57.7
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 5.1e-142 508.4 442 57.9
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 6.6e-142 508.1 442 58.4
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 1.5e-141 506.9 469 57.4
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 9.6e-141 504.2 443 58.5
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 9.6e-141 504.2 443 58.5
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 4.8e-140 501.9 481 55.3
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 2.0e-138 496.5 469 56.3
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 1.1e-136 490.7 455 55.8
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 9.3e-136 487.6 449 55.7
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 4.6e-135 485.3 440 58.2
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 4.6e-135 485.3 437 56.5
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 3.9e-134 482.3 455 57.1
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 1.5e-133 480.3 437 55.6
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.5e-133 480.3 458 54.1
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.9e-133 479.9 458 56.1
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 5.6e-133 478.4 443 56.9
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 9.6e-133 477.6 437 56.1
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 1.4e-131 473.8 443 56.0
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 1.8e-131 473.4 439 56.0
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 5.3e-131 471.9 462 55.4
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 6.9e-131 471.5 456 53.7
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 3.4e-130 469.2 442 56.1
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 6.4e-129 464.9 455 54.9
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 2.4e-128 463.0 431 55.7
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 2.4e-128 463.0 431 55.7
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 5.5e-128 461.8 430 56.0
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 6.0e-127 458.4 422 57.1
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 7.9e-127 458.0 414 56.3
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 1.0e-126 457.6 435 55.6
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 5.1e-126 455.3 406 57.1
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 4.0e-123 445.7 443 51.0
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 1.5e-122 443.7 459 51.9
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 1.5e-122 443.7 441 54.0
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 5.8e-122 441.8 358 59.5
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 1.3e-121 440.7 445 53.0
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 1.7e-121 440.3 476 50.6
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 3.8e-121 439.1 438 54.6
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 1.8e-118 430.3 442 53.4
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 2.3e-118 429.9 476 50.4
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 5.1e-118 428.7 423 53.9
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 8.7e-118 427.9 444 54.1
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 1.1e-117 427.6 442 50.0
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 7.4e-117 424.9 443 51.2
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 9.7e-117 424.5 417 54.0
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 3.7e-116 422.5 445 51.9
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 2.4e-115 419.9 440 49.8
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 4.1e-115 419.1 436 53.0
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 9.0e-115 417.9 444 50.5
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 9.0e-115 417.9 444 52.5
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 1.5e-114 417.2 444 52.5
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 2.6e-114 416.4 484 48.3
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 7.6e-114 414.8 438 50.9
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.0e-113 414.5 440 49.8
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 1.0e-113 414.5 444 50.9
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 2.9e-113 412.9 430 52.6
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 5.0e-113 412.1 353 59.8
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 6.5e-113 411.8 436 50.7
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 8.5e-113 411.4 360 58.6
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 4.6e-111 405.6 428 53.0
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 4.6e-111 405.6 434 52.3
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 4.6e-111 405.6 353 57.5
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.0e-110 404.4 422 50.9
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 3.9e-110 402.5 424 51.4
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 5.1e-110 402.1 413 52.3
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 2.5e-109 399.8 421 50.8
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 3.3e-109 399.4 419 50.6
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 3.7e-108 396.0 353 55.8
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 2.4e-107 393.3 418 50.0
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.2e-106 391.0 376 54.8
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 1.5e-106 390.6 418 49.8
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 1.5e-106 390.6 301 64.1
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 3.4e-106 389.4 423 49.6
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 4.5e-106 389.0 355 55.8
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 1.0e-105 387.9 370 54.9
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.3e-105 387.5 331 58.3
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 3.8e-105 386.0 451 47.5
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 1.4e-104 384.0 425 49.9
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 2.5e-104 383.3 422 48.8
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 7.9e-103 378.3 423 48.7
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.0e-102 377.9 421 47.7
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 2.3e-102 376.7 422 49.3
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.4e-99 367.5 429 48.0
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 6.9e-99 365.2 423 47.8
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.2e-98 364.4 476 44.1
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 1.7e-97 360.5 343 55.4
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.3e-92 342.0 415 46.7
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 2.4e-91 340.1 511 40.3
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 1.0e-89 334.7 360 50.3
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 8.5e-89 331.6 287 59.2
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 1.1e-88 331.3 432 44.4
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.2e-82 311.2 320 52.5
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 8.0e-79 298.5 422 43.6
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.3e-76 291.2 552 34.8
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 4.1e-75 286.2 322 48.1
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.9e-73 280.0 433 40.6
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 3.3e-72 276.6 257 55.6
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.1e-71 273.9 399 38.8
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 2.7e-66 256.9 332 45.5
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.0e-65 255.0 420 38.1
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.8e-62 244.2 234 49.6
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 8.3e-60 235.3 496 33.7
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 2.4e-59 233.8 334 42.2
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.3e-57 227.3 549 31.0
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 1.2e-53 214.9 164 62.2
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.5e-53 214.5 369 37.7
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 2.3e-49 200.7 204 53.4
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 7.3e-48 195.7 267 43.1
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.1e-46 191.8 491 30.5
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 6.6e-41 172.6 155 52.9
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.7e-39 166.4 163 48.5
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.9e-36 156.4 132 56.1
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 7.1e-35 152.5 132 55.3
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 1.6e-31 141.4 201 39.8
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 1.4e-30 138.3 107 65.4
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 3.8e-28 130.2 151 50.3
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 2.4e-27 127.5 95 60.0
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.8e-23 113.2 131 42.7
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 9.9e-13 79.0 58 65.5
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 1.4e-11 75.1 54 64.8
FvH4_7g33361 Fragaria vesca HOM05D006040 ORTHO05D007134 1.8e-09 68.2 76 46.1
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 1.8e-09 68.2 38 78.9
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 7.4e-08 62.8 53 49.1


User provided reference genes

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