Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0176 Cannabis sativa HOM05D016588 ORTHO05D000401 1.1e-157 560.1 310 100.0
CANSAT56G3242 Cannabis sativa HOM05D002730 ORTHO05D003261 9.1e-72 274.6 258 56.2
CANSAT56G3476 Cannabis sativa HOM05D000589 ORTHO05D000401 1.6e-28 131.0 177 38.4
Glyma.07G140900 Glycine max HOM05D001576 ORTHO05D000401 1.0e-22 111.7 266 30.5
Glyma.17G168800 Glycine max HOM05D001576 ORTHO05D000401 2.5e-21 107.1 263 29.7
Glyma.09G103200 Glycine max HOM05D000589 ORTHO05D000401 9.6e-21 105.1 200 35.5
Glyma.19G095100 Glycine max HOM05D000589 ORTHO05D000401 9.6e-21 105.1 199 37.2
EL10Ac2g04164 Beta vulgaris HOM05D016588 ORTHO05D019835 1.2e-20 104.8 267 31.8
EL10Ac2g03760 Beta vulgaris HOM05D016588 ORTHO05D019835 5.8e-18 95.9 194 34.5
AUR62034330 Chenopodium quinoa HOM05D016588 ORTHO05D019835 9.9e-18 95.1 197 33.5
Glyma.06G285600 Glycine max HOM05D000589 ORTHO05D000401 2.9e-17 93.6 246 28.9
Os04g0286500 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 5.4e-16 89.4 94 45.7
Os08g0225900 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 5.4e-16 89.4 94 45.7
Os08g0561000 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 5.4e-16 89.4 94 45.7
Glyma.12G112700 Glycine max HOM05D001576 ORTHO05D000401 9.3e-16 88.6 263 25.1
Glyma.08G292200 Glycine max HOM05D000589 ORTHO05D000401 3.5e-15 86.7 199 30.7
SGA_v2.0_scaffold167G38458 Striga asiatica HOM05D001576 ORTHO05D000401 6.0e-15 85.9 254 27.6
Psat5g257800 Pisum sativum HOM05D000214 ORTHO05D000401 1.3e-14 84.7 194 30.4
Glyma.01G062500 Glycine max HOM05D001576 ORTHO05D000401 3.0e-14 83.6 156 37.2
Ca_08337_v3 Cicer arietinum L. HOM05D002397 ORTHO05D002667 6.6e-14 82.4 198 32.3
Psat4g220720 Pisum sativum HOM05D000589 ORTHO05D000401 8.7e-14 82.0 192 30.2
HanXRQChr09g0265661 Helianthus annuus HOM05D001576 ORTHO05D000401 1.5e-13 81.3 288 26.7
Medtr7g107340 Medicago truncatula HOM05D000589 ORTHO05D000401 2.5e-13 80.5 198 30.8
Medtr4g063670 Medicago truncatula HOM05D000589 ORTHO05D000401 3.3e-13 80.1 137 38.7
Psat3g071440 Pisum sativum HOM05D000589 ORTHO05D000401 3.3e-13 80.1 189 30.2
Psat7g167200 Pisum sativum HOM05D000589 ORTHO05D000401 3.3e-13 80.1 189 30.2
Psat7g215720 Pisum sativum HOM05D000589 ORTHO05D000401 3.3e-13 80.1 189 30.2
Medtr0867s0010 Medicago truncatula HOM05D001576 ORTHO05D000401 5.6e-13 79.3 204 31.4
Carub.0006s1187 Capsella rubella HOM05D000589 ORTHO05D000401 7.3e-13 79.0 174 32.8
Carub.0336s0001 Capsella rubella HOM05D000589 ORTHO05D000401 9.6e-13 78.6 152 34.9
Zm00001eb085790 Zea mays HOM05D001576 ORTHO05D000401 8.1e-12 75.5 226 26.1
Zm00001eb199990 Zea mays HOM05D001576 ORTHO05D000401 8.1e-12 75.5 226 26.1
Medtr7g088160 Medicago truncatula HOM05D002397 ORTHO05D000401 1.1e-11 75.1 223 27.8
SGA_v2.0_scaffold76G25122 Striga asiatica HOM05D001576 ORTHO05D000401 1.1e-11 75.1 126 31.7
EL10Ac7g18040 Beta vulgaris HOM05D016588 ORTHO05D019835 1.8e-11 74.3 177 33.9
Psat2g006720 Pisum sativum HOM05D000589 ORTHO05D000401 1.8e-11 74.3 172 29.1
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 2.4e-11 73.9 253 26.5
BolC7t44270H Brassica oleracea HOM05D000126 ORTHO05D000085 5.3e-11 72.8 190 30.5
TPR.G38844 Trifolium pratense HOM05D000589 ORTHO05D000401 6.9e-11 72.4 124 39.5
Glyma.04G114000 Glycine max HOM05D000589 ORTHO05D000401 2.0e-10 70.9 143 32.2
BolC2t06323H Brassica oleracea HOM05D000589 ORTHO05D000401 4.5e-10 69.7 237 27.0
Medtr4g083510 Medicago truncatula HOM05D000589 ORTHO05D000401 4.5e-10 69.7 196 30.6
BolC2t08934H Brassica oleracea HOM05D000589 ORTHO05D000401 5.8e-10 69.3 170 30.6
BolC4t27712H Brassica oleracea HOM05D000589 ORTHO05D000401 5.8e-10 69.3 258 22.1
Medtr1g051185 Medicago truncatula HOM05D000589 ORTHO05D000401 5.8e-10 69.3 122 36.9
Medtr1g106885 Medicago truncatula HOM05D006550 ORTHO05D008630 5.8e-10 69.3 244 23.4
Medtr2g022120 Medicago truncatula HOM05D006550 ORTHO05D008630 5.8e-10 69.3 244 23.4
Medtr3g067785 Medicago truncatula HOM05D006550 ORTHO05D008630 5.8e-10 69.3 244 23.4
Medtr4g013220 Medicago truncatula HOM05D006550 ORTHO05D008630 5.8e-10 69.3 244 23.4
Medtr4g026120 Medicago truncatula HOM05D006550 ORTHO05D008630 5.8e-10 69.3 244 23.4
Medtr4g036435 Medicago truncatula HOM05D006550 ORTHO05D008630 5.8e-10 69.3 244 23.4
Medtr5g066280 Medicago truncatula HOM05D006550 ORTHO05D008630 5.8e-10 69.3 244 23.4
TPR.G23664 Trifolium pratense HOM05D000589 ORTHO05D000401 5.8e-10 69.3 128 32.8
Medtr6g453050 Medicago truncatula HOM05D006550 ORTHO05D008630 7.6e-10 68.9 260 22.3
Psat0ss1279g0240 Pisum sativum HOM05D000589 ORTHO05D000401 7.6e-10 68.9 168 29.8
Psat4g018520 Pisum sativum HOM05D000589 ORTHO05D000401 7.6e-10 68.9 150 33.3
BolC1t03974H Brassica oleracea HOM05D000589 ORTHO05D000401 9.9e-10 68.6 244 25.4
Psat0s1573g0200 Pisum sativum HOM05D000589 ORTHO05D000401 1.7e-09 67.8 145 31.7
Psat0s4925g0040 Pisum sativum HOM05D000589 ORTHO05D000401 2.9e-09 67.0 150 32.7
Hund03592 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.9e-09 67.0 247 24.7
Hund20929 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.9e-09 67.0 250 25.6
Hund23756 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.9e-09 67.0 250 24.4
EL10Ac7g17309 Beta vulgaris HOM05D016588 ORTHO05D019835 3.8e-09 66.6 148 31.8
Medtr5g077245 Medicago truncatula HOM05D006550 ORTHO05D008630 4.9e-09 66.2 236 22.9
BcaC03g17387 Brassica carinata HOM05D000589 ORTHO05D000401 6.4e-09 65.9 140 27.9
BolC2t10503H Brassica oleracea HOM05D000589 ORTHO05D000401 6.4e-09 65.9 142 31.0
BolC2t11251H Brassica oleracea HOM05D000589 ORTHO05D000401 6.4e-09 65.9 169 27.8
Hund11062 Selenicereus undatus HOM05D000214 ORTHO05D000131 8.4e-09 65.5 250 24.0
BcaC03g18152 Brassica carinata HOM05D000589 ORTHO05D000401 1.1e-08 65.1 140 27.1
Hund14643 Selenicereus undatus HOM05D000214 ORTHO05D011049 1.1e-08 65.1 250 23.2
Hund24086 Selenicereus undatus HOM05D000214 ORTHO05D011049 1.4e-08 64.7 270 24.1
BolC2t11945H Brassica oleracea HOM05D000589 ORTHO05D000401 1.9e-08 64.3 186 28.5
HanXRQChr01g0006531 Helianthus annuus HOM05D001218 ORTHO05D003142 1.9e-08 64.3 168 31.5
Hund07454 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.9e-08 64.3 250 24.0
Hund15479 Selenicereus undatus HOM05D000214 ORTHO05D011049 1.9e-08 64.3 248 25.4
Hund18413 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.9e-08 64.3 250 24.0
Hund03698 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.4e-08 63.9 250 23.6
CARHR054710 Cardamine hirsuta HOM05D006550 ORTHO05D008630 3.2e-08 63.5 225 21.3
Psat5g141560 Pisum sativum HOM05D000214 ORTHO05D000401 3.2e-08 63.5 140 32.9
Hund20099 Selenicereus undatus HOM05D000214 ORTHO05D000131 5.4e-08 62.8 248 25.4
BolC7t44298H Brassica oleracea HOM05D000589 ORTHO05D000401 7.1e-08 62.4 157 33.1
BolC7t44420H Brassica oleracea HOM05D000589 ORTHO05D000401 7.1e-08 62.4 231 26.0
Hund01990 Selenicereus undatus HOM05D000214 ORTHO05D011049 7.1e-08 62.4 270 23.7
AT5G41220 Arabidopsis thaliana HOM05D002591 ORTHO05D002791 9.3e-08 62.0 147 29.9
BolC8t49443H Brassica oleracea HOM05D000589 ORTHO05D000401 9.3e-08 62.0 153 31.4
Medtr7g083520 Medicago truncatula HOM05D006550 ORTHO05D008630 9.3e-08 62.0 259 23.9
BolC6t36890H Brassica oleracea HOM05D000589 ORTHO05D000401 1.2e-07 61.6 230 25.2
Medtr7g062380 Medicago truncatula HOM05D006550 ORTHO05D008630 1.2e-07 61.6 269 22.3
BolC4t26616H Brassica oleracea HOM05D000589 ORTHO05D000401 1.6e-07 61.2 156 31.4
RcHm_v2.0_Chr6g0270241 Rosa chinensis HOM05D001576 ORTHO05D000401 1.6e-07 61.2 143 29.4
BolC6t37820H Brassica oleracea HOM05D000589 ORTHO05D000401 2.1e-07 60.8 177 30.5
Os11g0303800 Oryza sativa ssp. japonica HOM05D000589 ORTHO05D000401 2.1e-07 60.8 196 27.6
AL8G21500 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 2.7e-07 60.5 182 29.7
Hund01102 Selenicereus undatus HOM05D018444 ORTHO05D011049 2.7e-07 60.5 190 27.9
Hund04709 Selenicereus undatus HOM05D000214 ORTHO05D011049 2.7e-07 60.5 164 31.7
AL5G28650 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 3.5e-07 60.1 255 27.1
AT3G47680 Arabidopsis thaliana HOM05D000589 ORTHO05D000401 3.5e-07 60.1 226 26.1
BcaC07g36993 Brassica carinata HOM05D000589 ORTHO05D000401 3.5e-07 60.1 128 28.9
BolC5t29855H Brassica oleracea HOM05D000589 ORTHO05D000401 3.5e-07 60.1 156 28.2
Os06g0635500 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 3.5e-07 60.1 225 23.6
CSS0005302 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 6.0e-07 59.3 153 28.1
CSS0014799 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 6.0e-07 59.3 153 28.1
Medtr6g092533 Medicago truncatula HOM05D006550 ORTHO05D008630 6.0e-07 59.3 238 22.3
QL03p006855 Quercus lobata HOM05D001576 ORTHO05D000401 6.0e-07 59.3 202 26.2
QL06p039590 Quercus lobata HOM05D001576 ORTHO05D000401 6.0e-07 59.3 202 26.2
QL11p028487 Quercus lobata HOM05D001576 ORTHO05D000401 6.0e-07 59.3 144 27.8
AL6G29040 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 1.0e-06 58.5 180 30.6
HanXRQChr16g0526551 Helianthus annuus HOM05D007803 ORTHO05D007881 1.0e-06 58.5 163 28.2
CARHR154020 Cardamine hirsuta HOM05D006550 ORTHO05D008630 1.3e-06 58.2 127 29.9
HanXRQChr10g0281341 Helianthus annuus HOM05D007803 ORTHO05D000401 1.3e-06 58.2 122 32.8
BolC8t47336H Brassica oleracea HOM05D000589 ORTHO05D000401 1.8e-06 57.8 195 23.6
Psat5g094880 Pisum sativum HOM05D000589 ORTHO05D000401 1.8e-06 57.8 124 33.9
Hund11163 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.8e-06 57.8 156 26.9
BcaC04g22975 Brassica carinata HOM05D001499 ORTHO05D001560 2.3e-06 57.4 121 28.9
BcaNung02550 Brassica carinata HOM05D000589 ORTHO05D000401 2.3e-06 57.4 140 24.3
BolC9t54228H Brassica oleracea HOM05D001499 ORTHO05D001560 2.3e-06 57.4 121 28.9
Hund15925 Selenicereus undatus HOM05D001576 ORTHO05D000401 2.3e-06 57.4 196 27.6
Carub.0001s4114 Capsella rubella HOM05D000589 ORTHO05D000401 3.0e-06 57.0 180 27.8
CiPaw.14G121300 Carya illinoinensis HOM05D001576 ORTHO05D010219 3.0e-06 57.0 193 25.4
BcaC05g24983 Brassica carinata HOM05D000589 ORTHO05D000401 3.9e-06 56.6 152 30.3
BolC6t38795H Brassica oleracea HOM05D001308 ORTHO05D000401 3.9e-06 56.6 122 31.1
CSS0012008 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.9e-06 56.6 153 27.5
CSS0015368 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.9e-06 56.6 153 27.5
CARHR052930 Cardamine hirsuta HOM05D006550 ORTHO05D008630 5.1e-06 56.2 169 25.4
Medtr6g069240 Medicago truncatula HOM05D006550 ORTHO05D008630 5.1e-06 56.2 196 22.4
Os11g0282700 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D020947 5.1e-06 56.2 138 29.0
BolC3t14123H Brassica oleracea HOM05D000589 ORTHO05D000401 6.7e-06 55.8 169 27.2
BolC8t47904H Brassica oleracea HOM05D000589 ORTHO05D000401 6.7e-06 55.8 147 29.9
BolC8t47924H Brassica oleracea HOM05D000589 ORTHO05D000401 6.7e-06 55.8 218 20.2
AL3G20450 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 8.7e-06 55.5 181 28.7
AL68U10010 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 8.7e-06 55.5 181 28.7
Psat7g219080 Pisum sativum HOM05D000589 ORTHO05D000401 8.7e-06 55.5 78 34.6
Hund24323 Selenicereus undatus HOM05D000214 ORTHO05D000131 8.7e-06 55.5 160 28.8


User provided reference genes

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