Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 2.8e-171 605.1 299 100.0
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 2.7e-113 412.5 218 95.4
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 3.7e-94 349.0 276 66.3
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 1.8e-93 346.7 276 66.3
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 3.1e-93 345.9 216 78.7
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 1.5e-92 343.6 276 65.6
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 3.8e-91 339.0 218 75.7
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 4.2e-90 335.5 276 64.1
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 1.2e-89 334.0 173 96.5
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 1.2e-89 334.0 218 75.7
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 1.0e-88 330.9 272 64.0
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.4e-88 330.5 216 76.4
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 2.3e-88 329.7 213 74.2
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 6.7e-88 328.2 276 62.0
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 1.5e-87 327.0 231 70.1
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 1.9e-87 326.6 213 73.7
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.9e-87 326.6 218 73.9
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 2.5e-87 326.2 276 62.3
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 2.5e-87 326.2 275 63.6
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 2.5e-87 326.2 217 72.8
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.7e-86 323.6 216 73.1
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 2.8e-86 322.8 218 72.9
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.8e-85 320.1 235 68.1
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 2.4e-85 319.7 218 70.2
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.4e-85 319.7 218 72.0
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 5.3e-85 318.5 216 73.6
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 5.3e-85 318.5 217 70.5
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 5.3e-85 318.5 218 70.2
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 6.9e-85 318.2 218 69.7
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 9.1e-85 317.8 216 72.7
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.5e-84 317.0 216 69.4
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 2.0e-84 316.6 217 69.1
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 3.4e-84 315.8 218 70.2
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.4e-84 315.8 216 71.3
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 4.5e-84 315.5 217 68.7
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 7.7e-84 314.7 218 69.3
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.7e-83 313.5 272 61.0
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 2.2e-83 313.2 284 58.5
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.9e-83 312.8 272 61.4
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 6.5e-83 311.6 270 60.4
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.4e-82 310.5 216 69.9
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.4e-82 310.5 218 68.3
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 1.9e-82 310.1 216 68.5
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.9e-82 310.1 218 69.7
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.9e-82 310.1 216 71.3
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 2.5e-82 309.7 217 69.6
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.2e-82 309.3 218 67.9
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 4.2e-82 308.9 216 69.0
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 5.5e-82 308.5 274 59.1
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 7.2e-82 308.1 218 67.4
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 7.2e-82 308.1 218 68.3
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.4e-82 307.8 218 68.3
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 9.4e-82 307.8 284 57.7
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 9.4e-82 307.8 218 69.7
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.2e-81 307.4 216 66.2
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 1.2e-81 307.4 216 68.5
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.2e-81 307.4 284 57.0
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.2e-81 307.4 284 57.0
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.6e-81 307.0 218 68.3
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 3.6e-81 305.8 218 66.5
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 2.3e-80 303.1 217 69.6
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 2.3e-80 303.1 216 69.0
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.3e-80 303.1 218 64.2
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 3.9e-80 302.4 202 71.3
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 6.7e-80 301.6 216 68.5
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 6.7e-80 301.6 216 68.5
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.5e-79 300.4 216 66.7
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 2.0e-79 300.1 223 68.2
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.6e-79 299.7 208 69.2
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 3.3e-79 299.3 242 60.7
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 4.4e-79 298.9 218 65.6
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 7.4e-79 298.1 218 67.9
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 6.3e-78 295.0 216 65.7
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 8.2e-78 294.7 218 64.7
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.1e-77 294.3 216 65.7
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.1e-77 294.3 213 67.6
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.1e-77 294.3 214 64.0
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 1.8e-77 293.5 216 65.3
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 1.8e-77 293.5 216 65.3
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 1.8e-77 293.5 216 65.3
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 2.4e-77 293.1 218 64.7
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 7.0e-77 291.6 216 64.8
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 9.1e-77 291.2 216 63.4
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.2e-76 290.8 240 60.0
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 1.2e-76 290.8 226 63.3
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 1.2e-76 290.8 226 63.3
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 1.2e-76 290.8 216 62.5
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 3.5e-76 289.3 237 59.9
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 3.5e-76 289.3 244 63.5
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 3.5e-76 289.3 218 64.7
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 4.5e-76 288.9 218 64.2
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 4.5e-76 288.9 276 56.2
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 1.0e-75 287.7 218 63.8
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.0e-75 287.7 218 64.2
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 2.2e-75 286.6 216 63.0
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 6.5e-75 285.0 216 63.0
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.9e-74 283.5 218 62.8
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.9e-74 283.5 218 62.8
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 5.5e-74 282.0 216 62.0
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 3.0e-72 276.2 247 56.7
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 2.0e-71 273.5 295 49.8
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 7.4e-71 271.6 214 57.9
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 3.7e-70 269.2 218 59.6
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.3e-67 260.8 216 59.3
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 7.2e-66 255.0 232 55.2
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.4e-64 250.8 225 59.6
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 1.3e-62 244.2 191 62.8
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 1.2e-60 237.7 176 63.1
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 1.2e-57 227.6 165 64.8
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 3.6e-57 226.1 150 72.7
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 3.0e-56 223.0 418 36.1
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 2.0e-55 220.3 207 58.5
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 9.8e-55 218.0 210 52.4
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 9.8e-55 218.0 210 50.5
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.8e-54 216.5 210 51.0
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.6e-52 210.7 235 45.5
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 3.5e-52 209.5 216 55.1
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 7.7e-52 208.4 217 49.3
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.7e-51 207.2 218 47.2
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 9.5e-50 201.4 224 52.7
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.8e-48 197.2 150 67.3
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 5.0e-43 179.1 117 66.7
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 8.6e-43 178.3 165 51.5
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 2.3e-40 170.2 218 43.6
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 9.2e-37 158.3 148 52.7
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 2.0e-36 157.1 104 72.1
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 9.5e-34 148.3 93 73.1
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 1.1e-29 134.8 76 84.2
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 4.6e-28 129.4 76 80.3
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 8.6e-27 125.2 162 44.4
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 2.4e-21 107.1 105 46.7
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 5.4e-21 105.9 194 36.1
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 1.3e-19 101.3 65 69.2
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 8.6e-19 98.6 71 63.4
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 4.9e-14 82.8 79 51.9
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 1.9e-13 80.9 131 38.9
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 1.0e-11 75.1 102 39.2
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 1.1e-10 71.6 162 29.6


User provided reference genes

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