Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 4.0e-142 508.1 251 100.0
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 8.3e-132 473.8 249 91.6
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 8.3e-132 473.8 249 91.6
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 1.1e-131 473.4 249 91.6
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 3.2e-131 471.9 251 90.4
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 9.2e-131 470.3 249 90.0
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.2e-130 469.9 249 90.8
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 2.0e-130 469.2 249 90.8
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 2.7e-130 468.8 251 89.6
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 2.7e-130 468.8 244 93.0
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 3.5e-130 468.4 249 90.4
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 7.8e-130 467.2 249 90.8
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 1.3e-129 466.5 246 91.5
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 1.7e-129 466.1 249 88.8
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 1.7e-129 466.1 249 90.8
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 2.3e-129 465.7 249 89.6
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 3.9e-129 464.9 249 89.6
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 5.0e-129 464.5 244 92.2
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 6.6e-129 464.2 249 90.0
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 6.6e-129 464.2 249 90.0
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 6.6e-129 464.2 244 92.2
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 1.5e-128 463.0 249 88.8
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 1.9e-128 462.6 249 90.0
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 3.3e-128 461.8 249 89.2
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 3.3e-128 461.8 249 88.0
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 5.6e-128 461.1 249 88.8
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 5.6e-128 461.1 249 88.8
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 5.6e-128 461.1 257 87.5
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 5.6e-128 461.1 251 88.0
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 9.5e-128 460.3 249 88.4
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 1.2e-127 459.9 249 88.8
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 1.4e-126 456.4 249 87.1
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 1.8e-126 456.1 249 89.2
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 3.1e-126 455.3 249 88.0
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 3.1e-126 455.3 249 87.1
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 3.1e-126 455.3 249 86.7
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 4.0e-126 454.9 251 87.3
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 4.0e-126 454.9 240 91.7
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 6.8e-126 454.1 249 88.0
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 1.5e-125 453.0 249 86.7
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 2.0e-125 452.6 249 88.4
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 2.6e-125 452.2 249 86.7
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 2.6e-125 452.2 240 91.7
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 5.8e-125 451.1 244 89.3
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 7.5e-125 450.7 240 91.2
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.3e-124 449.9 244 88.9
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 1.3e-124 449.9 244 88.9
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 1.3e-124 449.9 249 85.1
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 2.2e-124 449.1 249 84.7
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 2.2e-124 449.1 249 84.7
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 2.9e-124 448.7 244 88.9
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 2.9e-124 448.7 249 86.3
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 2.9e-124 448.7 249 84.7
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 2.9e-124 448.7 244 89.3
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 3.7e-124 448.4 249 86.3
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 3.7e-124 448.4 244 88.5
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 2.4e-123 445.7 245 88.6
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.4e-123 445.7 249 87.1
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 7.0e-123 444.1 296 76.0
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 1.6e-122 443.0 249 82.7
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 3.5e-122 441.8 249 83.5
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 4.6e-122 441.4 245 87.8
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 7.8e-122 440.7 249 83.1
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.7e-121 439.5 264 81.8
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 3.0e-121 438.7 244 86.5
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 6.6e-121 437.6 249 81.9
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.1e-120 436.8 254 82.3
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 1.1e-120 436.8 249 81.5
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 1.1e-120 436.8 230 89.6
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.1e-120 436.8 249 83.5
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 7.3e-120 434.1 233 90.6
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.2e-119 433.3 249 81.1
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 1.2e-119 433.3 244 86.5
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.6e-119 433.0 240 87.5
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 2.1e-119 432.6 249 81.9
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 8.0e-119 430.6 269 79.9
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 1.4e-118 429.9 246 85.8
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.3e-118 429.1 249 80.7
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 1.2e-117 426.8 249 80.3
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.2e-117 426.8 249 80.3
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 2.0e-117 426.0 249 80.3
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 2.0e-117 426.0 249 80.3
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 3.4e-117 425.2 249 79.9
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 5.8e-117 424.5 250 81.2
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 7.5e-117 424.1 249 79.9
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 7.5e-117 424.1 249 79.9
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 4.9e-116 421.4 296 69.9
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 8.3e-116 420.6 233 84.1
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 7.1e-115 417.5 249 79.1
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 3.9e-113 411.8 249 79.9
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.8e-110 402.9 249 77.1
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 6.8e-110 401.0 355 60.0
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 8.9e-110 400.6 254 79.5
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.5e-109 399.8 247 74.9
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 4.4e-109 398.3 249 76.3
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 7.3e-104 380.9 243 76.1
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 7.3e-104 380.9 249 76.7
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 2.1e-103 379.4 247 71.3
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 2.8e-103 379.0 212 87.3
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 1.8e-102 376.3 228 76.3
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 1.2e-101 373.6 249 73.1
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 4.9e-100 368.2 249 73.9
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.1e-94 350.5 194 89.7
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 2.4e-94 349.4 249 71.5
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 4.0e-94 348.6 236 70.8
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.9e-91 339.7 206 81.6
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 3.2e-91 339.0 238 68.9
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 6.0e-90 334.7 180 87.8
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 7.6e-85 317.8 323 54.5
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 2.1e-82 309.7 187 81.3
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 3.2e-75 285.8 151 91.4
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 1.2e-74 283.9 207 69.6
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 5.1e-73 278.5 245 53.9
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 3.7e-71 272.3 183 70.5
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 5.0e-68 261.9 211 66.8
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 1.3e-65 253.8 254 49.2
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.5e-64 249.6 152 77.0
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 4.5e-61 238.8 198 60.6
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 1.8e-57 226.9 244 52.9
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.1e-54 215.7 123 83.7
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.1e-48 197.6 99 96.0
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.1e-48 197.6 113 84.1
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 2.8e-47 193.0 101 89.1
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 8.2e-47 191.4 249 45.4
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 9.4e-43 177.9 101 80.2
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 9.7e-40 167.9 253 36.4
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 1.7e-39 167.2 158 60.8
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 2.0e-37 160.2 98 77.6
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 5.9e-37 158.7 98 72.4
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 2.4e-30 136.7 128 59.4
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.4e-17 94.4 67 61.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 5.2e-17 92.4 100 47.0
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 7.5e-16 88.6 137 45.3
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 4.1e-14 82.8 44 81.8
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 9.2e-14 81.6 56 71.4
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.0e-13 80.5 55 70.9
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 1.5e-08 64.3 30 90.0
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 2.2e-07 60.5 55 60.0


User provided reference genes

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