Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.6e-172 609.4 314 100.0
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 8.0e-92 341.3 329 58.1
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 2.7e-87 326.2 323 56.7
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 3.5e-87 325.9 342 54.1
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 4.6e-87 325.5 347 54.2
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 6.0e-87 325.1 347 52.7
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 8.6e-86 321.2 324 57.7
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 4.7e-84 315.5 364 52.5
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 3.1e-83 312.8 377 50.4
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 6.8e-83 311.6 344 52.9
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.4e-82 308.9 318 55.0
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.4e-82 308.9 318 54.7
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.8e-82 308.5 368 51.4
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.9e-81 306.2 367 51.8
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 8.3e-81 304.7 361 53.7
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.9e-80 303.5 374 50.8
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 4.1e-80 302.4 368 51.6
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 9.2e-80 301.2 376 50.0
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.6e-79 300.4 361 52.4
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 2.7e-79 299.7 368 51.4
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 7.8e-79 298.1 368 50.0
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 7.8e-79 298.1 363 50.1
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 8.6e-78 294.7 358 48.9
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.5e-77 293.1 326 53.1
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 2.5e-77 293.1 348 51.1
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.3e-77 292.7 345 49.9
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 7.3e-77 291.6 326 52.8
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.2e-76 290.8 326 52.8
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 6.2e-76 288.5 325 52.6
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 8.1e-76 288.1 379 47.8
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 1.1e-75 287.7 340 52.4
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.4e-75 287.3 370 48.9
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.8e-75 287.0 361 49.9
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 4.0e-75 285.8 335 52.5
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.6e-74 283.1 326 51.8
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 9.9e-74 281.2 345 50.7
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 4.9e-73 278.9 361 47.9
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.1e-72 277.7 327 52.0
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.6e-71 272.3 341 47.5
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 7.8e-71 271.6 340 47.6
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.3e-70 270.8 366 48.4
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.7e-70 270.4 324 51.5
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.7e-70 270.4 343 47.5
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.0e-70 269.6 343 48.1
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.9e-70 269.2 346 46.5
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.1e-69 267.7 324 51.2
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.1e-69 267.7 366 48.6
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.8e-68 263.1 344 46.8
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.6e-66 256.5 346 48.0
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 7.6e-66 255.0 401 43.9
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.9e-65 253.1 406 41.6
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 4.9e-65 252.3 355 45.9
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 6.4e-65 251.9 338 45.3
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.4e-64 248.8 338 45.0
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 1.0e-62 244.6 317 50.2
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 1.3e-62 244.2 319 48.9
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.7e-62 243.8 348 46.6
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 5.1e-62 242.3 269 53.5
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 5.1e-62 242.3 269 53.5
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.1e-61 241.1 388 42.0
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.3e-61 239.6 322 45.7
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.1e-59 234.6 314 45.2
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.2e-58 231.1 337 43.9
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 4.4e-58 229.2 329 46.8
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 9.9e-58 228.0 316 45.9
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 9.9e-58 228.0 322 47.2
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.7e-57 227.3 372 42.2
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.4e-57 224.9 335 43.0
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.3e-56 221.5 376 41.0
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.2e-55 221.1 323 44.9
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.7e-55 219.9 324 44.1
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.0e-54 216.5 350 39.4
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.1e-53 214.5 322 42.5
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 3.3e-53 213.0 383 41.0
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.6e-52 210.7 325 45.2
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.8e-52 209.1 331 43.2
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 8.1e-52 208.4 318 41.8
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-51 208.0 315 41.0
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 1.8e-51 207.2 345 42.0
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.0e-51 206.1 373 37.8
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.2e-49 200.3 316 42.7
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.1e-48 198.0 338 44.4
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.1e-48 198.0 319 42.6
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.2e-47 194.5 315 39.0
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.1e-47 193.7 319 41.1
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.8e-46 190.7 133 74.4
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.3e-46 190.3 309 39.2
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 6.7e-46 188.7 293 45.4
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.1e-45 188.0 322 39.8
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.9e-45 187.2 318 42.5
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 2.5e-45 186.8 312 41.0
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 5.6e-45 185.7 323 40.6
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 7.4e-45 185.3 312 40.1
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 9.6e-45 184.9 355 40.6
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.3e-44 184.5 323 40.2
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 2.8e-44 183.3 310 41.9
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 2.8e-44 183.3 310 41.9
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 6.2e-44 182.2 310 41.6
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.4e-43 181.0 320 38.8
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 6.9e-43 178.7 325 38.8
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.0e-42 177.2 370 37.6
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.6e-42 176.8 310 37.7
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 5.8e-42 175.6 317 40.4
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 5.8e-42 175.6 317 40.1
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.7e-41 174.1 373 34.3
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.2e-41 173.7 310 39.4
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.9e-40 170.6 310 41.0
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 2.1e-39 167.2 302 42.4
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 2.1e-39 167.2 134 65.7
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 2.7e-39 166.8 302 42.4
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.0e-38 163.3 369 35.2
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 5.1e-38 162.5 321 37.4
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 6.7e-38 162.2 311 40.8
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 6.7e-38 162.2 322 40.7
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 8.7e-38 161.8 319 37.6
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.5e-37 160.2 346 37.9
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 7.4e-37 158.7 380 33.9
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 7.4e-37 158.7 310 37.1
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.1e-36 157.1 342 36.3
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 3.7e-36 156.4 128 66.4
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 4.8e-36 156.0 170 55.9
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 9.0e-35 151.8 339 36.0
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.7e-33 147.5 321 36.4
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 2.9e-33 146.7 110 63.6
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.5e-33 145.6 311 35.7
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 6.5e-33 145.6 320 35.6
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 6.5e-33 145.6 439 31.4
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 1.4e-32 144.4 440 30.0
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-31 141.4 333 35.4
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.2e-31 141.4 333 35.4
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.8e-30 137.5 183 44.8
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 3.0e-30 136.7 107 69.2
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 6.7e-30 135.6 320 34.7
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 6.7e-30 135.6 320 34.7
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 6.7e-30 135.6 320 34.7
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 8.7e-30 135.2 308 31.5
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 7.4e-29 132.1 313 34.5
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 9.7e-29 131.7 160 46.9
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 9.7e-29 131.7 160 46.9
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 6.3e-28 129.0 361 30.5
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 8.2e-28 128.6 103 67.0
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 8.2e-28 128.6 103 67.0
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.2e-28 128.6 130 52.3
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 1.1e-27 128.3 310 33.9
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.8e-27 127.5 343 32.1
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.4e-27 127.1 124 55.6
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 4.1e-27 126.3 141 51.1
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 4.1e-27 126.3 207 41.1
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.2e-26 124.8 312 31.4
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 4.5e-26 122.9 352 33.0
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 5.9e-26 122.5 232 39.7
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.3e-25 121.3 156 50.6
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 2.9e-25 120.2 154 48.7
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.9e-24 117.5 73 82.2
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 1.9e-24 117.5 172 44.8
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.5e-24 117.1 104 52.9
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 5.5e-24 115.9 166 44.6
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 9.4e-24 115.2 128 52.3
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 1.4e-22 111.3 112 57.1
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.4e-22 111.3 341 31.4
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 3.0e-22 110.2 322 32.6
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 4.3e-21 106.3 73 71.2
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 6.3e-20 102.4 232 32.8
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 2.6e-18 97.1 314 29.6
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 9.4e-16 88.6 100 44.0
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 6.1e-15 85.9 263 28.5
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 7.9e-15 85.5 122 38.5
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.4e-11 74.7 43 86.0
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 7.0e-11 72.4 280 26.4
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 1.0e-09 68.6 100 45.0
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 1.3e-09 68.2 100 44.0
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 1.9e-08 64.3 100 42.0
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 6.7e-06 55.8 136 29.4


User provided reference genes

Program Settings