Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 5.4e-56 220.7 108 100.0
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 2.4e-51 205.3 102 98.0
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 4.1e-35 151.4 91 79.1
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 1.9e-32 142.5 91 74.7
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 5.5e-32 141.0 95 73.7
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 7.2e-32 140.6 92 71.7
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 9.3e-32 140.2 90 72.2
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 9.3e-32 140.2 108 63.9
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 1.4e-30 136.3 91 71.4
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 5.1e-30 134.4 92 69.6
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 6.7e-30 134.0 88 71.6
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 4.3e-29 131.3 94 67.0
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 1.3e-28 129.8 101 63.4
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 1.3e-28 129.8 89 67.4
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 1.7e-28 129.4 84 72.6
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 2.2e-28 129.0 98 64.3
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 2.2e-28 129.0 101 62.4
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 3.7e-28 128.3 87 66.7
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 6.3e-28 127.5 93 63.4
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 6.3e-28 127.5 102 59.8
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 1.4e-27 126.3 92 62.0
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 1.4e-27 126.3 93 65.6
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 3.1e-27 125.2 92 68.5
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 3.1e-27 125.2 103 54.4
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 4.1e-27 124.8 86 68.6
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 4.1e-27 124.8 87 64.4
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 4.1e-27 124.8 87 64.4
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 9.1e-27 123.6 93 62.4
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 9.1e-27 123.6 93 64.5
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 1.5e-26 122.9 104 57.7
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 2.0e-26 122.5 92 63.0
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 2.0e-26 122.5 101 61.4
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 2.6e-26 122.1 92 63.0
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 2.6e-26 122.1 88 64.8
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 4.5e-26 121.3 94 61.7
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 5.9e-26 120.9 94 60.6
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 5.9e-26 120.9 84 66.7
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 7.7e-26 120.6 92 62.0
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 7.7e-26 120.6 92 62.0
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 7.7e-26 120.6 92 62.0
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 1.3e-25 119.8 89 64.0
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 1.3e-25 119.8 104 56.7
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 1.3e-25 119.8 92 62.0
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 1.7e-25 119.4 100 60.0
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 2.5e-24 115.5 82 64.6
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 3.2e-24 115.2 93 59.1
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 4.2e-24 114.8 83 61.4
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 9.4e-24 113.6 101 55.4
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 9.4e-24 113.6 95 55.8
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 3.0e-22 108.6 68 72.1
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 3.9e-22 108.2 95 53.7
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 6.7e-22 107.5 67 73.1
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 2.0e-21 105.9 88 56.8
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 4.4e-21 104.8 88 55.7
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 1.7e-20 102.8 76 63.2
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 4.8e-20 101.3 58 75.9
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 1.4e-19 99.8 109 49.5
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 4.1e-19 98.2 64 70.3
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 2.6e-18 95.5 68 66.2
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 2.6e-18 95.5 63 69.8
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 2.6e-18 95.5 63 69.8
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 2.6e-18 95.5 69 65.2
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 2.6e-18 95.5 85 57.6
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 2.6e-18 95.5 68 67.6
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 1.0e-17 93.6 58 74.1
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 1.7e-17 92.8 84 51.2
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 2.2e-17 92.4 68 55.9
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 2.2e-17 92.4 61 63.9
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 3.8e-17 91.7 61 63.9
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 5.0e-17 91.3 62 66.1
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 8.5e-17 90.5 80 56.2
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 8.5e-17 90.5 121 41.3
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 1.1e-16 90.1 54 77.8
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 1.1e-16 90.1 80 50.0
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 5.5e-16 87.8 52 67.3
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 1.6e-15 86.3 63 55.6
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 1.8e-14 82.8 70 54.3
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 2.3e-14 82.4 64 60.9
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 1.1e-13 80.1 62 53.2
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 3.3e-13 78.6 69 50.7
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 3.7e-12 75.1 83 47.0
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 4.1e-11 71.6 85 42.4
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 5.9e-10 67.8 32 84.4
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 1.3e-09 66.6 63 52.4
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 1.3e-09 66.6 48 64.6
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 4.2e-08 61.6 36 69.4
CsaV3_5G039910 Cucumis sativus L. HOM05D007718 ORTHO05D009752 8.8e-06 53.9 54 48.1


User provided reference genes

Program Settings